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View Structure Prediction Details

Protein: GAR1
Organism: Saccharomyces cerevisiae
Length: 205 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GAR1.

Description E-value Query
Range
Subject
Range
gi|123994963, gi... - gi|157928874|gb|ABW03722.1| nucleolar protein family A, member 1 (H/ACA small nucleolar RNPs) [synth...
GAR1 - GAR1 ribonucleoprotein homolog (yeast)
3.0E-46 [4..132] [37..168]
GAR1_YEAST - H/ACA ribonucleoprotein complex subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G...
gi|151944037 - gi|151944037|gb|EDN62330.1| small nucleolar RNP protein [Saccharomyces cerevisiae YJM789]
GAR1 - Protein component of the H/ACA snoRNP pseudouridylase complex, involved in the modification and clea...
7.0E-46 [1..152] [1..152]
GAR1_MOUSE - H/ACA ribonucleoprotein complex subunit 1 OS=Mus musculus GN=Gar1 PE=1 SV=1
1.0E-44 [2..132] [40..179]
CG4038-PA - This gene is referred to in FlyBase by the symbol Dmel\CG4038 (CG4038, FBgn0011824). It is a protein...
2.0E-42 [4..139] [36..166]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
1.0E-41 [4..139] [34..164]
GAR1_SCHPO - H/ACA ribonucleoprotein complex subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=...
gar1 - snoRNP pseudouridylase complex protein Gar1
6.0E-41 [1..138] [1..131]
NLAL2_ARATH - H/ACA ribonucleoprotein complex subunit 1-like protein 2 OS=Arabidopsis thaliana GN=At5g18180 PE=2 S...
6.0E-36 [2..127] [9..135]
GAR1_ENCCU - H/ACA ribonucleoprotein complex subunit 1 OS=Encephalitozoon cuniculi GN=GAR1 PE=3 SV=1
GAR1_ENCCU - H/ACA ribonucleoprotein complex subunit 1 OS=Encephalitozoon cuniculi (strain GB-M1) GN=GAR1 PE=3 SV...
1.0E-31 [36..153] [28..152]

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Predicted Domain #1
Region A:
Residues: [1-130]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFRGGNRGG RGGFRGGFRG GRTGSARSFQ QGPPDTVLEM GAFLHPCEGD IVCRSINTKI  60
   61 PYFNAPIYLE NKTQVGKVDE ILGPLNEVFF TIKCGDGVQA TSFKEGDKFY IAADKLLPIE 120
  121 RFLPKPKVVG 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [131-205]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPKPKNKKKR SGAPGGRGGA SMGRGGSRGG FRGGRGGSSF RGGRGGSSFR GGSRGGSFRG  60
   61 GSRGGSRGGF RGGRR

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 8.4
Match: 1la5A
Description: No description for 1la5A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle