| Protein: | RPN1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 993 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPN1.
| Description | E-value | Query Range |
Subject Range |
|
|
1088.0 | [0..6] | [989..125] |
|
|
1087.0 | [0..6] | [989..87] |
|
|
1083.0 | [0..6] | [989..79] |
|
|
1078.0 | [0..6] | [989..7] |
|
|
1076.0 | [0..6] | [989..7] |
|
|
1073.0 | [0..6] | [989..7] |
|
Region A: Residues: [1-130] |
1 11 21 31 41 51
| | | | | |
1 MVDESDKKQQ TIDEQSQISP EKQTPNKKDK KKEEEEQLSE EDAKLKTDLE LLVERLKEDD 60
61 SSLYEASLNA LKESIKNSTS SMTAVPKPLK FLRPTYPDLC SIYDKWTDPN LKSSLADVLS 120
121 ILAMTYSENG
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.939 | N/A | N/A | a.118.9 | ENTH/VHS domain |
| View | Download | 0.878 | N/A | N/A | a.118.9 | ENTH/VHS domain |
| View | Download | 0.878 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.851 | N/A | N/A | a.118.9 | ENTH/VHS domain |
| View | Download | 0.837 | N/A | N/A | a.118.9 | ENTH/VHS domain |
| View | Download | 0.837 | N/A | N/A | a.118.9 | ENTH/VHS domain |
| View | Download | 0.834 | N/A | N/A | a.118.9 | ENTH/VHS domain |
| View | Download | 0.833 | N/A | N/A | a.48.4 | Description not found. |
| View | Download | 0.832 | N/A | N/A | a.118.9 | ENTH/VHS domain |
| View | Download | 0.832 | N/A | N/A | a.118.9 | ENTH/VHS domain |
| View | Download | 0.385 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.380 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.352 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.315 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.280 | N/A | N/A | a.196.1 | Description not found. |
|
Region A: Residues: [131-215] |
1 11 21 31 41 51
| | | | | |
1 KHDSLRYRLL SDVSDFEGWG HEYIRHLALE IGEVYNDQVE KDAEDETSSD GSKSDGSAAT 60
61 SGFEFSKEDT LRLCLDIVPY FLKHN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [216-820] |
1 11 21 31 41 51
| | | | | |
1 GEEDAVDLLL EIESIDKLPQ FVDENTFQRV CQYMVACVPL LPPPEDVAFL KTAYSIYLSQ 60
61 NELTDAIALA VRLGEEDMIR SVFDATSDPV MHKQLAYILA AQKTSFEYEG VQDIIGNGKL 120
121 SEHFLYLAKE LNLTGPKVPE DIYKSHLDNS KSVFSSAGLD SAQQNLASSF VNGFLNLGYC 180
181 NDKLIVDNDN WVYKTKGDGM TSAVASIGSI YQWNLDGLQQ LDKYLYVDEP EVKAGALLGI 240
241 GISASGVHDG EVEPALLLLQ DYVTNPDTKI SSAAILGLGI AFAGSKNDEV LGLLLPIAAS 300
301 TDLPIETAAM ASLALAHVFV GTCNGDITTS IMDNFLERTA IELKTDWVRF LALALGILYM 360
361 GQGEQVDDVL ETISAIEHPM TSAIEVLVGS CAYTGTGDVL LIQDLLHRLT PKNVKGEEDA 420
421 DEEETAEGQT NSISDFLGEQ VNEPTKNEEA EIEVDEMEVD AEGEEVEVKA EITEKKNGES 480
481 LEGEEIKSEE KKGKSSDKDA TTDGKNDDEE EEKEAGIVDE LAYAVLGIAL IALGEDIGKE 540
541 MSLRHFGHLM HYGNEHIRRM VPLAMGIVSV SDPQMKVFDT LTRFSHDADL EVSMNSIFAM 600
601 GLCGA
|
| Detection Method: | |
| Confidence: | 2.08 |
| Match: | 2ie3A |
| Description: | No description for 2ie3A was found. |
|
Region A: Residues: [821-993] |
1 11 21 31 41 51
| | | | | |
1 GTNNARLAQL LRQLASYYSR EQDALFITRL AQGLLHLGKG TMTMDVFNDA HVLNKVTLAS 60
61 ILTTAVGLVS PSFMLKHHQL FYMLNAGIRP KFILALNDEG EPIKVNVRVG QAVETVGQAG 120
121 RPKKITGWIT QSTPVLLNHG ERAELETDEY ISYTSHIEGV VILKKNPDYR EEE
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
