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View Structure Prediction Details

Protein: MYO1
Organism: Saccharomyces cerevisiae
Length: 1928 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MYO1.

Description E-value Query
Range
Subject
Range
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
0.0 [1..1178] [1..1127]
MYH4_PIG - Myosin-4 OS=Sus scrofa GN=MYH4 PE=2 SV=1
0.0 [2..1925] [27..1937]
gi|4505301, gi|1... - gi|4505301|ref|NP_002463.1| myosin, heavy polypeptide 8, skeletal muscle, perinatal [Homo sapiens], ...
0.0 [2..1924] [29..1937]
MYH6_MOUSE - Myosin-6 OS=Mus musculus GN=Myh6 PE=1 SV=2
0.0 [2..1921] [26..1933]
MYO11_ARATH - Myosin-11 OS=Arabidopsis thaliana GN=XI-E PE=3 SV=1
0.0 [3..1180] [6..1131]
gi|6682319 - gi|6682319|emb|CAB64662.1| myosin heavy chain [Mytilus galloprovincialis]
0.0 [238..1915] [1..1689]
MYH4_RABIT - Myosin-4 OS=Oryctolagus cuniculus GN=MYH4 PE=1 SV=1
0.0 [2..1925] [27..1938]
MYH11_CHICK - Myosin-11 OS=Gallus gallus GN=MYH11 PE=1 SV=4
0.0 [7..1916] [29..1936]

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Predicted Domain #1
Region A:
Residues: [1-1171]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGGQSCSSN MIVWIPDEKE VFVKGELMST DINKNKFTGQ EEQIGIVHPL DSTEVSNLVQ  60
   61 VRISDVFPVN PSTFDKVENM SELTHLNEPS VLYNLEKRYD CDLIYTYSGL FLVAINPYHN 120
  121 LNLYSEDHIN LYHNKHNRLS KSRLDENSHE KLPPHIFAIA EEAYENLLSE GKDQSILVTG 180
  181 ESGAGKTENT KKILQYLASI TSGSPSNIAP VSGSSIVESF EMKILQSNPI LESFGNAQTV 240
  241 RNNNSSRFGK FIKIEFNEHG MINGAHIEWY LLEKSRIVHQ NSKERNYHIF YQLLSGLDDS 300
  301 ELKNLRLKSR NVKDYKILSN SNQDIIPGIN DVENFKELLS ALNIIGFSKD QIRWIFQVVA 360
  361 IILLIGNIEF VSDRAEQASF KNDVSAICSN LGVDEKDFQT AILRPRSKAG KEWVSQSKNS 420
  421 QQAKFILNAL SRNLYERLFG YIVDMINKNL DHGSATLNYI GLLDIAGFEI FENNSFEQLC 480
  481 INYTNEKLQQ FFNNHMFVLE QSEYLKENIQ WDYIDYGKDL QLTIDLIESK GPPTGVLPLL 540
  541 DEEAVLPKST DESFYSKLIS TWDQNSSKFK RSRLKNGFIL KHYAGDVEYT VEGWLSKNKD 600
  601 PLNDNLLSLL SSSQNDIISK LFQPEGEKSS SAGVEANISN QEVKKSARTS TFKTTSSRHR 660
  661 EQQITLLNQL ASTHPHFVRC IIPNNVKKVK TFNRRLILDQ LRCNGVLEGI RLAREGYPNR 720
  721 IAFQEFFQRY RILYPENSTT TTFSSKLKAS TKQNCEFLLT SLQLDTKVYK IGNTKLFFKA 780
  781 GVLADLEKQK DVKLNNIMIK LTATIRGYTV RKEITYHLQK LKKTRVIGNT FRLYNRLVKE 840
  841 DPWFNLFIRI KPLLTSSNDM TRTKKFNEQI NKLKNDLQEM ESKKKFLEEK NQKTVNELEN 900
  901 TQDLLNQEKE NLRKNESLLN RVKTSSETLQ KQFDDLVSEK DEISREKLEV AQNLEEAHQK 960
  961 IQGLQETIRE REATLEKLHS KNNELIKQIS DLNCDISKEQ SSQSLIKESK LKLENEIKRL1020
 1021 KDVINSKEEE IKSFNDKLSS SEEDLDIKLV TLEKNCNIAM SRLQSLVTEN SDLRSKNENF1080
 1081 KKEKAALNNQ LKNKESELLK MKEKIDNHKK ELATFSKQRD DAVSEHGKIT AELKETRIQL1140
 1141 TEYKSNYQKI KEEYSNFQRE TKEQEQKKRN S

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 1i84S_
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [1172-1395]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LVESLNDSKI KELEARLSQE ISLNQYLNKR ISGNSVETNI SSTRRSTSYS DDPLDKEDII  60
   61 KKYYDLQLAF TEITRNLENE IEEKKNLISR LRFTETRLAS SSFEDQKIKA QMKKLKKLIQ 120
  121 DMDPSIPLDS ILNEPLDNCP DKESDINKLM LEVDYLKRQL DIETRAHYDA ENAISALHSK 180
  181 FRKIQGESSL SSSDIYKLKF EASEERVKSL EDKLKTMPLR DRTN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [1396-1843]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPVGDIIKNR DSISKYEEEI RYYKLENYKL QEILNESNGK LSQLTLDLRQ SKSKEALLSE  60
   61 QLDRLQKDLE STERQKELLS STIKQQKQQF ENCMDDLQGN ELRLREHIHA LKQAEEDVKN 120
  121 MASIIEKLKT QNKQKEKLIW EREMERNDSD MQLQETLLEL KRVQDVKKIL SDDLAHLKER 180
  181 LSAVEDRSQY TDEINRLKEE LNCSLKAETN LKKEFATLKY KLETSTNDSE AKISDLLKQL 240
  241 DHYTKVVEML NNEKDAISLA EKELYQKYEA LNTECESLKG KIVSLTKIKQ ELESDLNQKT 300
  301 DALQISNAAL SSSTQKNKEI TEKIKYLEET LQLQMEQNSR NGELVKTLQA SCNGYKDKFD 360
  361 DEKQKNIDLY EENQTLQKLN TDLQLQLKNL HERLSDTTEK NAWLSKIHEL ENMVSLETDL 420
  421 KYEEMKKNKS LERAVEELQT KNSQQTDV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.0
Match: 1cii__
Description: Colicin Ia; Colicin Ia, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [1844-1928]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IELANKNRSE FEEATLKYEA QISDLEKYIS QQELEMKKSI RDNSSYRDKV QEMAQEIEFW  60
   61 KSRYESTMIG SKNIDSNNAQ SKIFS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.0
Match: 1c1gA_
Description: Tropomyosin
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle