| Protein: | YSC84 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 468 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YSC84.
| Description | E-value | Query Range |
Subject Range |
|
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0.0 | [1..468] | [1..468] |
|
|
1.0E-95 | [1..468] | [1..430] |
|
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4.0E-73 | [3..284] | [1..266] |
|
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1.0E-72 | [3..211] | [268..476] |
|
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2.0E-71 | [3..273] | [1..250] |
|
Region A: Residues: [1-80] |
1 11 21 31 41 51
| | | | | |
1 MGINNPIPRS LKSETKKAAK VLRSFVKPNQ VFGADQVIPP YVLKRAKGLA IITVLKAGFL 60
61 FSGRAGSGVI VARLKDGTWS
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.398 | 0.320 | actin cortical patch | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.437 | 0.042 | actin cortical patch | d.1.1 | Microbial ribonucleases |
| View | Download | 0.384 | 0.031 | actin cortical patch | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.507 | 0.020 | actin cortical patch | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.396 | 0.010 | actin cortical patch | d.39.1 | Dynein light chain 8 (DLC8) |
| View | Download | 0.507 | N/A | N/A | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.437 | N/A | N/A | d.1.1 | Microbial ribonucleases |
| View | Download | 0.398 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.396 | N/A | N/A | d.39.1 | Dynein light chain 8 (DLC8) |
| View | Download | 0.384 | N/A | N/A | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.377 | N/A | N/A | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.352 | N/A | N/A | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.351 | N/A | N/A | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.340 | N/A | N/A | d.39.1 | Dynein light chain 8 (DLC8) |
| View | Download | 0.307 | N/A | N/A | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.277 | N/A | N/A | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.274 | N/A | N/A | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.271 | N/A | N/A | a.130.1 | Chorismate mutase II |
| View | Download | 0.266 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.266 | N/A | N/A | a.23.4 | Mitochondrial import receptor subunit Tom20 |
| View | Download | 0.258 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.256 | N/A | N/A | b.82.3 | cAMP-binding domain-like |
| View | Download | 0.255 | N/A | N/A | d.1.1 | Microbial ribonucleases |
| View | Download | 0.252 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.240 | N/A | N/A | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.230 | N/A | N/A | d.17.2 | Copper amine oxidase, domains 1 and 2 |
| View | Download | 0.229 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.226 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.221 | N/A | N/A | a.2.7 | tRNA-binding arm |
| View | Download | 0.218 | N/A | N/A | b.7.3 | PHL pollen allergen |
| View | Download | 0.205 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.205 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.205 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.203 | N/A | N/A | c.47.1 | Thioredoxin-like |
| View | Download | 0.202 | N/A | N/A | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
|
Region A: Residues: [81-413] |
1 11 21 31 41 51
| | | | | |
1 APSAIAMAGA GAGGMVGVEL TDFVFILNSE EAVRSFSEFG TITLGGNVSV SAGPLGRSAE 60
61 AAASASTGGV SAVFAYSKSK GLFAGVSVEG SAILERREAN RKFYGDNCTS KMILSGRVKV 120
121 PPAADPLLRI LESRAFNFTR HDHDDNASGD DFYDDGQYSD NTSHYYDDIP DSFDSTDESS 180
181 TRPNTRSSRR RGMSLGSRSR YDDDYDDDGY GRGRGYGDFD SEDEDYDYGR SPNRNSSRNR 240
241 GPQIDRGTKP RANTRWEDDL YDRDTEYSRP NHSGRDYDNT RGNRRGYGRE RGYSLGHGPT 300
301 HPSNMSNVDD LSHKMSKTGL GNESTATNSA TPT
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| Detection Method: | |
| Confidence: | 9.31 |
| Match: | 1k83A |
| Description: | RBP1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [414-468] |
1 11 21 31 41 51
| | | | | |
1 AVALYNFAGE QPGDLAFKKG DVITILKKSD SQNDWWTGRT NGKEGIFPAN YVRVS
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| Detection Method: | |
| Confidence: | 111.325697 |
| Match: | 1semA_ |
| Description: | Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [387-468] |
1 11 21 31 41 51
| | | | | |
1 NVDDLSHKMS KTGLGNESTA TNSATPTAVA LYNFAGEQPG DLAFKKGDVI TILKKSDSQN 60
61 DWWTGRTNGK EGIFPANYVR VS
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| Detection Method: | |
| Confidence: | 20.69897 |
| Match: | 2a08A |
| Description: | No description for 2a08A was found. |
