YRC Public Data Repository - Protein Structure Prediction

Protein:	TIM10
Organism:	Saccharomyces cerevisiae
Length:	93 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TIM10.

Description	E-value	Query Range	Subject Range
gi\|50766075 - gi\|50766075\|ref\|XP_422986.1\| PREDICTED: similar to translocase of inner mitochondrial membrane 10 ho...	103.0	[0..18]	[90..124]
gi\|87248623, gi\|... - gi\|87248623\|gb\|ABD36364.1\| mitochondrial intermembrane space translocase subunit Tim10 [Bombyx mori]...	102.0	[0..11]	[87..4]
TIM10_PICSO - Mitochondrial import inner membrane translocase subunit Tim10 OS=Pichia sorbitophila (strain ATCC MY... TIM10_MILFA, TIM... - Mitochondrial import inner membrane translocase subunit Tim10 OS=Pichia farinosa GN=TIM10 PE=3 SV=1,...	100.0	[0..3]	[92..1]
gi\|32411199, gi\|... - gi\|32411199\|ref\|XP_326080.1\| hypothetical protein [Neurospora crassa], gi\|28924727\|gb\|EAA33840.1\| hy... gi\|85109764 - gi\|85109764\|ref\|XP_963076.1\| hypothetical protein [Neurospora crassa OR74A]	99.0	[0..5]	[88..613]
TIM10_DEBHA - Mitochondrial import inner membrane translocase subunit TIM10 OS=Debaryomyces hansenii GN=TIM10 PE=3... TIM10_DEBHA - Mitochondrial import inner membrane translocase subunit TIM10 OS=Debaryomyces hansenii (strain ATCC ...	99.0	[0..3]	[92..1]
TIM10_YARLI - Mitochondrial import inner membrane translocase subunit TIM10 OS=Yarrowia lipolytica (strain CLIB 12... TIM10_YARLI - Mitochondrial import inner membrane translocase subunit TIM10 OS=Yarrowia lipolytica GN=TIM10 PE=3 S...	97.0	[0..1]	[78..1]
gi\|73955150 - gi\|73955150\|ref\|XP_854099.1\| PREDICTED: similar to Mitochondrial import inner membrane translocase s...	96.0	[0..1]	[88..166]
TIM10_ASPFU - Mitochondrial import inner membrane translocase subunit tim10 OS=Aspergillus fumigatus GN=tim10 PE=3... TIM10_ASPFU - Mitochondrial import inner membrane translocase subunit tim10 OS=Neosartorya fumigata (strain ATCC M... gi\|159130673 - gi\|159130673\|gb\|EDP55786.1\| mitochondrial intermembrane space translocase subunit Tim10, putative [A... gi\|119496885, gi... - gi\|119496885\|ref\|XP_001265216.1\| mitochondrial intermembrane space translocase subunit Tim10, putati...	96.0	[0..1]	[93..1]
gi\|114195880, gi... - gi\|115388581\|ref\|XP_001211796.1\| mitochondrial import inner membrane translocase subunit tim10 [Aspe...	95.0	[0..1]	[91..1]
TIM10_SCHPO - Mitochondrial import inner membrane translocase subunit tim10 OS=Schizosaccharomyces pombe (strain 9... tim10 - Tim9-Tim10 complex subunit Tim10	95.0	[0..1]	[87..1]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFLGFGGGQ PQLSSQQKIQ AAEAELDLVT DMFNKLVNNC YKKCINTSYS EGELNKNESS  60
   61 CLDRCVAKYF ETNVQVGENM QKMGQSFNAA GKF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.0
Match:	2bskB
Description:	Crystal structure of the TIM9 Tim10 hexameric complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits