YRC Public Data Repository - Protein Structure Prediction

Protein:	MUP3
Organism:	Saccharomyces cerevisiae
Length:	546 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MUP3.

Description	E-value	Query Range	Subject Range
LAT2_RAT - Large neutral amino acids transporter small subunit 2 OS=Rattus norvegicus GN=Slc7a8 PE=1 SV=1	4.0E-82	[21..519]	[1..481]
LAT2_RABIT - Large neutral amino acids transporter small subunit 2 OS=Oryctolagus cuniculus GN=SLC7A8 PE=1 SV=1	2.0E-81	[21..519]	[1..480]
gi\|165936285, gi... - gi\|89104688\|ref\|ZP_01177224.1\| COG0833: Amino acid transporters [Yersinia pestis biovar Orientalis s... gi\|108807022, gi... - gi\|108807022\|ref\|YP_650938.1\| lysine transporter [Yersinia pestis Antiqua], gi\|108778935\|gb\|ABG12993... gi\|229679023, gi... - gi\|229903253\|ref\|ZP_04518366.1\| lysine transporter [Yersinia pestis Nepal516], gi\|229679023\|gb\|EEO75... Q66CR2\|Q66CR2_YERPS - Lysine-specific permease lysP, APC family precursor - Yersinia pseudotuberculosis gi\|166009838, gi... - gi\|166009838\|ref\|ZP_02230736.1\| lysine-specific permease LysP [Yersinia pestis biovar Antiqua str. E... gi\|165924474, gi... - gi\|165924474\|ref\|ZP_02220306.1\| lysine-specific permease LysP [Yersinia pestis biovar Orientalis str... gi\|167400403, gi... - gi\|167400403\|ref\|ZP_02305916.1\| lysine-specific permease LysP [Yersinia pestis biovar Antiqua str. U... gi\|166211768, gi... - gi\|166211768\|ref\|ZP_02237803.1\| lysine-specific permease LysP [Yersinia pestis biovar Antiqua str. B... gi\|167424094, gi... - gi\|167424094\|ref\|ZP_02315847.1\| lysine-specific permease LysP [Yersinia pestis biovar Mediaevalis st... gi\|167419868, gi... - gi\|167419868\|ref\|ZP_02311621.1\| lysine-specific permease LysP [Yersinia pestis biovar Orientalis str... gi\|186894753, gi... - gi\|186894753\|ref\|YP_001871865.1\| lysine transporter [Yersinia pseudotuberculosis PB1/+], gi\|18669777... gi\|170024977, gi... - gi\|170024977\|ref\|YP_001721482.1\| lysine transporter [Yersinia pseudotuberculosis YPIII], gi\|16975151... gi\|229841266, gi... - gi\|229841266\|ref\|ZP_04461425.1\| lysine transporter [Yersinia pestis biovar Orientalis str. PEXU2], g... gi\|229843369, gi... - gi\|229843369\|ref\|ZP_04463515.1\| lysine transporter [Yersinia pestis biovar Orientalis str. India 195... gi\|229895742, gi... - gi\|229895742\|ref\|ZP_04510912.1\| lysine transporter [Yersinia pestis Pestoides A], gi\|229700665\|gb\|EE... gi\|149366712, gi... - gi\|149366712\|ref\|ZP_01888746.1\| putative lysine-specific permease [Yersinia pestis CA88-4125], gi\|14... gi\|145599660, gi... - gi\|145599660\|ref\|YP_001163736.1\| lysine transporter [Yersinia pestis Pestoides F], gi\|145211356\|gb\|A... gi\|25296480 - pir\|\|AH0159 probable lysine-specific permease lysP [imported] - Yersinia pestis (strain CO92) gi\|45435969, gi\|... - gi\|45441110\|ref\|NP_992649.1\| lysine transporter [Yersinia pestis biovar Microtus str. 91001], gi\|454... gi\|22126753, gi\|... - gi\|22126753\|ref\|NP_670176.1\| lysine transporter [Yersinia pestis KIM], gi\|21959776\|gb\|AAM86427.1\|AE0... gi\|218928459, gi... - gi\|218928459\|ref\|YP_002346334.1\| lysine transporter [Yersinia pestis CO92], gi\|16121591\|ref\|NP_40490... gi\|51595681, gi\|... - gi\|51595681\|ref\|YP_069872.1\| lysine transporter [Yersinia pseudotuberculosis IP 32953], gi\|51588963\|... gi\|162353225, gi... - gi\|77634357\|ref\|ZP_00796459.1\| COG0833: Amino acid transporters [Yersinia pestis Angola], gi\|1624204... gi\|153948146, gi... - gi\|77632298\|ref\|ZP_00794884.1\| COG0833: Amino acid transporters [Yersinia pseudotuberculosis IP 3175...	3.0E-81	[47..512]	[3..472]
LAT2_MOUSE - Large neutral amino acids transporter small subunit 2 OS=Mus musculus GN=Slc7a8 PE=1 SV=1	3.0E-81	[21..519]	[1..479]
PUT4 - Proline permease, required for high-affinity transport of proline; also transports the toxic proline... PUT4_YEAST - Proline-specific permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PUT4 PE=2 SV=2 gi\|207340844 - gi\|207340844\|gb\|EDZ69071.1\| YOR348Cp-like protein [Saccharomyces cerevisiae AWRI1631]	7.0E-81	[5..542]	[50..606]
YI26_SCHPO - Uncharacterized amino-acid permease P7G5.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) G... SPAP7G5.06 - amino acid permease, unknown 4	3.0E-80	[9..526]	[25..540]
gi\|68470470, gi\|... - gi\|68470731\|ref\|XP_720611.1\| N-acetylglucosamine-inducible general amino acid permease [Candida albi... gi\|18568390 - gi\|18568390\|gb\|AAL76065.1\| Gap1 protein [Candida albicans] gi\|238882678 - gi\|238882678\|gb\|EEQ46316.1\| general amino-acid permease GAP1 [Candida albicans WO-1]	3.0E-80	[42..538]	[52..553]

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Predicted Domain #1

Region A:
Residues: [1-380]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPLLFNSGK ANPSQDVFID VEVGDITTKY GSTNTGSFSS MDTVEAQAIK AETARFMEVP  60
   61 QGRHLGVFST VVLFVSRIMG SGIFAVPSVI LLNTGGNKLI YFAIWVFSAA IAFAGLYLFL 120
  121 EFGSWIPKSG GRKNFLERSF ERPRLLISVV FSCYSVLTGY ALTGSIVFGK YVLSAFGVTD 180
  181 DSWSKYVSIS FIIFAVLIHG VSVRHGVFIQ NALGGLKLIM IVLMCFAGLY TLFFYKSTGQ 240
  241 VAWDLPVTQV EKDSLLSVSS IATAFISSFF CFSGWDTVHT VTSEIKNPVK TLKVSGPLSL 300
  301 IICFVCYTMM NVAYLKVLTY EEIVSAGPLV GSVLFTKLFG PRVGGKFIAF SIAISAASNI 360
  361 LVVIYSISRV NQEIFKEGYL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [381-546]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFSIHMSKNW PFDAPLPSIS LCGFITIAWI LILPKEGESF NYLVSMDGYG NQFFLLLVAI  60
   61 GLFIWRFKHK NEVPEIRAST FGVLAIITLS LYMLMAPFFA DPSLNRVGFL PPYQIMSLLV 120
  121 IVACFFFWLV KFVLLPKFFH YKLLPKITYL HDGLIVTEWV KKPCLC

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits