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View Structure Prediction Details

Protein: GOS1
Organism: Saccharomyces cerevisiae
Length: 223 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GOS1.

Description E-value Query
Range		 Subject
Range
VTI12_ARATH - Vesicle transport v-SNARE 12 OS=Arabidopsis thaliana GN=VTI12 PE=1 SV=3
 1.0E-41 [7..221] [5..214]
GOSR1_CRIGR - Golgi SNAP receptor complex member 1 OS=Cricetulus griseus GN=GOSR1 PE=1 SV=1
 3.0E-39 [6..222] [8..247]
GOSR1 - golgi SNAP receptor complex member 1
 3.0E-39 [5..222] [7..247]
gi|125526428 - gi|125526428|gb|EAY74542.1| hypothetical protein OsI_02435 [Oryza sativa Indica Group]
gi|18844938, gi|... - gi|34914100|ref|NP_918397.1| similar to vesicle transport protein [Oryza sativa (japonica cultivar-g...
 4.0E-39 [7..210] [5..202]
GOSR1_RAT - Golgi SNAP receptor complex member 1 OS=Rattus norvegicus GN=Gosr1 PE=1 SV=1
 8.0E-39 [6..222] [8..247]
GOSR1_MOUSE - Golgi SNAP receptor complex member 1 OS=Mus musculus GN=Gosr1 PE=1 SV=2
 8.0E-39 [6..222] [8..247]
GOSR1_YEAST - Golgi SNAP receptor complex member 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GOS...
GOS1 - v-SNARE protein involved in Golgi transport, homolog of the mammalian protein GOS-28/GS28
 1.0E-38 [1..223] [1..223]

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Predicted Domain #1
Region A:
Residues: [1-135] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSQPSFVTI RGKAISLETQ TESLLSKYST FAQTTSSEQT GQEKKIDKQL EGILGQRQDV  60
   61 IDSLTQICDS NPAISASKLS QLHRHKEILQ DHWKSFRNIR SSIQQERNRL NLLFSVKNDI 120
  121 ANSTTDAPAP IGDAD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.045757
Match: 1i84S_
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [136-223] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EYIQNETRRI DQSNNVVDRL ISQAWETRSQ FHSQSNVLNT ANNKVLQTLQ RIPGVNQLIM  60
   61 KINTRRKKNA FVLATITTLC ILFLFFTW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.30103
Match: 1gl2C_
Description: Vesicle ransport v-SNARE protein VTI1b
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle