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View Structure Prediction Details

Protein: YHL026C
Organism: Saccharomyces cerevisiae
Length: 268 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YHL026C.

Description E-value Query
Range
Subject
Range
YJD2_SCHPO - Uncharacterized protein C594.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC594.0...
SPCC594.02c - conserved fungal protein
7.0E-33 [138..209] [164..236]

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Predicted Domain #1
Region A:
Residues: [1-116]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYHSRVDLIT LWAFPHTISG DCALSLFIQV GLTWASEEIL VGFDDYKRPV FRLNKWITKP  60
   61 SPLKTESNEE IPPPKKRFIV DYFESKDNVV AKQNTLYHKH NWLFGYLEVN RGIIPK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.555 d.110.3 PYP-like sensor domain (PAS domain)
View Download 0.555 d.110.3 PYP-like sensor domain (PAS domain)
View Download 0.281 d.17.4 NTF2-like
View Download 0.281 d.17.4 NTF2-like
View Download 0.277 d.24.1 Pili subunits
View Download 0.277 d.24.1 Pili subunits
View Download 0.276 d.110.3 PYP-like sensor domain (PAS domain)
View Download 0.232 b.60.1 Lipocalins
View Download 0.232 b.60.1 Lipocalins

Predicted Domain #2
Region A:
Residues: [117-268]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKEATLKGFL TSQFIHDSTQ SKFMNFIEWF VQKFIRSMIL AIAMFIVIWP VTMGILAGIG  60
   61 HKVGSHDYYF NDYPLPQVMK LIYAVVIAFV CTPVAIIVIV LRNQFHEELY YEGLANGTLQ 120
  121 QDQEVCSTGN RSSGSTDQDI STTKQQSQEA VA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle