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View Structure Prediction Details

Protein: YGR272C
Organism: Saccharomyces cerevisiae
Length: 152 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGR272C.

Description E-value Query
Range
Subject
Range
gi|51969290, gi|... - gi|51969354|dbj|BAD43369.1| unknown protein [Arabidopsis thaliana], gi|51969290|dbj|BAD43337.1| unkn...
170.0 [0..2] [141..7]
gi|2130250 - gi|2130250|pir||S62533 hypothetical protein SPAC12G12.02 - fission yeast (Schizosaccharomyces pombe...
155.0 [0..18] [145..1]
EFG1P_SCHPO - rRNA-processing protein efg1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=efg1 PE=3 SV=...
SPAC12G12.02 - rRNA processing protein, unnamed
150.0 [0..18] [145..1]
EFG1P_CANGA - rRNA-processing protein EFG1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 ...
EFG1P_CANGA - rRNA-processing protein EFG1 OS=Candida glabrata GN=EFG1 PE=3 SV=1
128.0 [0..3] [144..5]
gi|44981062 - gi|44981062|gb|AAS50914.1| ABR143Cp [Ashbya gossypii ATCC 10895]
gi|45185373, gi|... - gi|45185373|ref|NP_983090.1| ABR143Cp [Ashbya gossypii ATCC 10895], gi|44981062|gb|AAS50914.1| ABR14...
125.0 [0..3] [142..30]

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Predicted Domain #1
Region A:
Residues: [1-152]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKLQRKRSK ALGSSLEMSQ IMDAGTNKIK RRIRDLERLL KKKKDILPST VIIEKERNLQ  60
   61 ALRLELQNNE LKNKIKANAK KYHMVRFFEK KKALRKYNRL LKKIKESGAD DKDLQQKLRA 120
  121 TKIELCYVIN FPKTEKYIAL YPNDTPSTDP KA

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.21
Match: 1rh1A
Description: crystal structure of the cytotoxic bacterial protein colicin B at 2.5 A resolution
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle