| Protein: | APL6 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 809 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APL6.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..770] | [1..770] |
|
|
0.0 | [6..799] | [8..786] |
|
|
0.0 | [42..800] | [29..743] |
|
|
0.0 | [30..780] | [1..695] |
|
Region A: Residues: [1-122] |
1 11 21 31 41 51
| | | | | |
1 MVDSIHRIAS ALDTAKVITR EAAAVATSKL GESSYTYYSQ NINPQQLVTL LNSRNSREVR 60
61 DAMKRIISIM ASDDDSIDVQ LYFADVVKNI TTNDTKVKRL IHLYLLRFAE NDPNLTLLSI 120
121 NS
|
| Detection Method: |  |
| Confidence: | 386.228787 |
| Match: | 1gw5B_ |
| Description: | Adaptin beta subunit N-terminal fragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [123-223] |
1 11 21 31 41 51
| | | | | |
1 LQKSLSDSNS ELRCFALSAL SDMKMSSLAP IILHTVKKLV TDPSAMVRGE VALAIIKLYR 60
61 AGKNDYHEEL LDILKELMAD TDPKVISCAV LAYKECYADH L
|
| Detection Method: | |
| Confidence: | 386.228787 |
| Match: | 1gw5B_ |
| Description: | Adaptin beta subunit N-terminal fragment |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [224-390] |
1 11 21 31 41 51
| | | | | |
1 ELLHGHFRRY CRIIKQLDSW SQSYLIELLI KYCKQYLPKP TVVDKSSEGS PRSCPLPDKY 60
61 NEIEYPSYEV VNDPDLDLFL QSLNCLIYSS NPTVILSCCN ALYQLASPLQ MKNTKFIEAL 120
121 VRTVTMTENQ GNKEMLLQAI HFLSILDQTL FLPYTKKFYV FPKDPIV
|
| Detection Method: | |
| Confidence: | 386.228787 |
| Match: | 1gw5B_ |
| Description: | Adaptin beta subunit N-terminal fragment |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [391-576] |
1 11 21 31 41 51
| | | | | |
1 ASIWKIQILS TLINESNVKE IFKELKYYVA SAHFPENVVI MAVKSLSRCG QLSTSWESHV 60
61 MKWLIDHMES HNLSASVLDA YVNVIRMLVQ KNPTKHLRII FKLADLLTVQ TSLADNARAG 120
121 IVWLFGEIAS IEFKICPDVL RRLIQNFSNE GPETRCQILV LSAKLLSYDI DNFKQAQVTG 180
181 SEENNQ
|
| Detection Method: | |
| Confidence: | 386.228787 |
| Match: | 1gw5B_ |
| Description: | Adaptin beta subunit N-terminal fragment |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [577-722] |
1 11 21 31 41 51
| | | | | |
1 NPPYYDFSGS RISQMYNAVL YLAKYDDEFD IRDRARMISS LFDSGKYEIV SLLLQAPKPT 60
61 ARSDDFIVSA RLETHTPEIK EFFRMLPWNT EITEVGETGN DIREGAELKD YNKYKKSFSS 120
121 QSFITNNSAR SFTSSSNAKL TGINDG
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.304 | 0.089 | Golgi to vacuole transport | a.118.9 | ENTH/VHS domain |
| View | Download | 0.286 | 0.009 | Golgi to vacuole transport | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.274 | 0.009 | Golgi to vacuole transport | a.95.1 | Influenza virus matrix protein M1 |
|
Region A: Residues: [723-809] |
1 11 21 31 41 51
| | | | | |
1 DSNSISGKGN VNTFTSQNGK KYRLQSLDEF FSDIPERKSK PRKIIKVVEE SSDEDEDESE 60
61 ESSDDDEYSD SSLGTSSSGT SSSHLEL
|
| Detection Method: | |
| Confidence: | 11.154902 |
| Match: | 1iu1A_ |
| Description: | Gamma1-adaptin domain |
Matching Structure (courtesy of the PDB): |
|
