Protein: | SDA1 |
Organism: | Saccharomyces cerevisiae |
Length: | 767 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SDA1.
Description | E-value | Query Range |
Subject Range |
|
913.0 | [0..10] | [765..9] |
|
876.0 | [0..10] | [765..9] |
|
862.0 | [0..10] | [765..9] |
|
861.0 | [0..92] | [765..1] |
|
852.0 | [0..10] | [765..9] |
|
850.0 | [0..1] | [765..1] |
Region A: Residues: [1-77] |
1 11 21 31 41 51 | | | | | | 1 MGRRSRAAML PTNIILLQNL VKRDPESYQE EFLQQYAHYE SLRDIFMLNG LAGGDSAAAT 60 61 NGLDVGNGSS TMAGTNG |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.520 | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |
View | Download | 0.447 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
View | Download | 0.438 | a.251.1 | Description not found. |
View | Download | 0.437 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
View | Download | 0.427 | a.60.14 | Description not found. |
View | Download | 0.399 | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |
View | Download | 0.371 | a.12.1 | Kix domain of CBP (creb binding protein) |
View | Download | 0.368 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.367 | a.112.1 | Description not found. |
Region A: Residues: [78-196] |
1 11 21 31 41 51 | | | | | | 1 TTMSTSTSQL IELVGFVSQV CSCFPRETAN FPSELKQLLL EHHKSLPFEL KEKILSCLTM 60 61 LRNKDVITAE ELIQSLFPLL VAYSSHGNSL GVNSHAKELR KIIYTNLISL LKSCNTNGK |
Region A: Residues: [197-325] |
1 11 21 31 41 51 | | | | | | 1 NQKLNKSTQA VCFNLLDQPD SQGIWATKLT RELWRRGIWD DSRTVEIMTQ AALHQDVKIV 60 61 MSGVMFFLDA DREREENFEE NSEDEDGFDL DALRHKMQVN KKTGRRGKKL ENAIKTVKKK 120 121 KKNGPGAPQ |
Region A: Residues: [326-501] |
1 11 21 31 41 51 | | | | | | 1 GYLNFSAIHL LRDPQGFAEK LFKEHLSGKT KNKFDMEQKI SLMQLLSRLI GTHKLIVLGI 60 61 YTFFLKYLTP KQRDVTRIMS ACAQACHDLV PPEVINVMVR KIADEFVSDG VANEVAAAGI 120 121 NTIREICSRA PLAIDEILLQ DLVEYKGSKA KGVNMAAKSL IALYRDVAPE MLKKKD |
Region A: Residues: [502-682] |
1 11 21 31 41 51 | | | | | | 1 RGKNAAMEVQ EAKKGGKDSK RPQFGADNSV QGIAGIELLA KWKKEHGEES ENEDADANWE 60 61 VDVDSEEDDV DGEWVTMDSD KEYDVDMEDS DDEKDNAKGK ESDSDLELSD DDDEKEVKDE 120 121 QEDADIDPEA AFREIASTRI LTPADFAKLQ ELRNEESVAK IMGIHKQDKR EELVDASTLT 180 181 G |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [683-767] |
1 11 21 31 41 51 | | | | | | 1 PIKYKQSREE RLQKVLEGRE GRDKFGSRRG KRDNMRSTTN REKERRKNFV MSIHKRSVRG 60 61 KQKMSLRDKQ KVLRAHITKQ KKKGY |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.441 | a.150.1 | Anti-sigma factor AsiA |
View | Download | 0.383 | d.110.4 | SNARE-like |
View | Download | 0.383 | d.110.4 | SNARE-like |
View | Download | 0.313 | a.101.1 | Uteroglobin-like |
View | Download | 0.297 | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |
View | Download | 0.297 | a.112.1 | Description not found. |
View | Download | 0.295 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
View | Download | 0.254 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
View | Download | 0.252 | d.192.1 | YlxR-like |