YRC Public Data Repository - Protein Structure Prediction

Protein:	FMP43
Organism:	Saccharomyces cerevisiae
Length:	146 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FMP43.

Description	E-value	Query Range	Subject Range
YHR162W - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th... gi\|151944108 - gi\|151944108\|gb\|EDN62401.1\| conserved protein [Saccharomyces cerevisiae YJM789] MPC2_YEAST - Mitochondrial pyruvate carrier 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MPC2 PE...	191.0	[0..1]	[117..1]
gi\|7504062 - gi\|7504062\|pir\|\|T25797 hypothetical protein F53F10.3 - Caenorhabditis elegans	171.0	[0..4]	[112..21]
gi\|50302615, gi\|... - gi\|50302615\|ref\|XP_451243.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640374\|emb\|CAH0283... gi\|49640374 - gi\|49640374\|emb\|CAH02831.1\| KLLA0A05500p [Kluyveromyces lactis]	171.0	[0..1]	[132..1]
gi\|44983293 - gi\|44983293\|gb\|AAS52475.1\| AEL210Cp [Ashbya gossypii ATCC 10895] gi\|45190397, gi\|... - gi\|45190397\|ref\|NP_984651.1\| AEL210Cp [Ashbya gossypii ATCC 10895], gi\|44983293\|gb\|AAS52475.1\| AEL21...	169.0	[0..1]	[125..1]
gi\|125777326, gi... - gi\|54639317\|gb\|EAL28719.1\| GA14151-PA [Drosophila pseudoobscura], gi\|125777326\|ref\|XP_001359570.1\| G...	166.0	[0..9]	[104..39]
gi\|49525627 - gi\|49525627\|emb\|CAG59244.1\| unnamed protein product [Candida glabrata] gi\|49525627, gi\|... - gi\|50287781\|ref\|XP_446320.1\| unnamed protein product [Candida glabrata], gi\|49525627\|emb\|CAG59244.1\|...	165.0	[0..4]	[125..2]
gi\|7488128, gi\|7... - pir\|\|F71409 probable light induced protein - Arabidopsis thaliana, gi\|7268175\|emb\|CAB78511.1\| light ...	163.0	[0..9]	[106..214]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASAFNFAF RRFWNSETGP KTVHFWAPTL KWGLVFAGLN DIKRPVEKVS GAQNLSLLAT  60
   61 ALIWTRWSFV IKPKNYLLAS VNFFLGCTAG YHLTRIANFR IRNGDSFKQV IHYIIKGETP 120
  121 AAVAAKQTAS TSMNKGVIGT NPPITH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	84.744727
Match:	PF03650.4
Description:	No description for PF03650.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.875	N/A	N/A	a.246.1	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits