| Protein: | RTA1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 317 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RTA1.
| Description | E-value | Query Range |
Subject Range |
|
|
409.0 | [0..1] | [317..1] |
|
|
278.0 | [0..6] | [275..16] |
|
|
274.0 | [0..10] | [275..5] |
|
|
267.0 | [0..6] | [317..15] |
|
|
243.0 | [0..9] | [273..7] |
|
|
232.0 | [0..8] | [275..17] |
|
Region A: Residues: [1-138] |
1 11 21 31 41 51
| | | | | |
1 MAKDGFELYR YTPELGASIL FTVLFAVSGV AFVILLFHYS VKSKRRVGSL MKSQPVLRYY 60
61 GTVNLAGAYI PFIFGCFVEC VGFAFRCKSS KDTTLLNPYI IQTVFLLVSP TLYAASIYMI 120
121 FGRMATLLFA ENLMIMPA
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.666 | N/A | N/A | a.24.1 | Apolipoprotein |
| View | Download | 0.666 | N/A | N/A | a.24.1 | Apolipoprotein |
| View | Download | 0.647 | N/A | N/A | a.24.27 | Description not found. |
| View | Download | 0.595 | N/A | N/A | a.24.2 | Aspartate receptor, ligand-binding domain |
| View | Download | 0.595 | N/A | N/A | a.24.2 | Aspartate receptor, ligand-binding domain |
| View | Download | 0.541 | N/A | N/A | a.66.1 | Transducin (alpha subunit), insertion domain |
| View | Download | 0.541 | N/A | N/A | a.66.1 | Transducin (alpha subunit), insertion domain |
| View | Download | 0.531 | N/A | N/A | a.8.7 | Description not found. |
| View | Download | 0.487 | N/A | N/A | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.404 | N/A | N/A | a.7.1 | Spectrin repeat |
|
Region A: Residues: [139-317] |
1 11 21 31 41 51
| | | | | |
1 RFNTTIFVIG DVGSLLLQAI GGAMMSKVTS ASSGSHLVTA GLFIQIAFFG LFIINEVLFI 60
61 FKMSKKPTNV SVRYGSWKYL NIALLVNSFL ILIRSIVRAV EFIQGYDGEI ASHEWYLYIF 120
121 DGLPMFLLVL IFIVAFPLIN IFRIHEESIQ AQQSARFDGT DYPDVEVTSI EEDLASKSE
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
