YRC Public Data Repository - Protein Structure Prediction

Protein:	TRX2
Organism:	Saccharomyces cerevisiae
Length:	104 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRX2.

Description	E-value	Query Range	Subject Range
TRXM_PEA - Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1	1.0E-35	[3..104]	[69..172]
gi\|56752273, gi\|... - gi\|56752273\|ref\|YP_172974.1\| thioredoxin [Synechococcus elongatus PCC 6301], gi\|56687232\|dbj\|BAD8045... gi\|79689 - gi\|79689\|pir\|\|A32956 thioredoxin m - Synechococcus sp THIO1_SYNE7 - Thioredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=trxA PE=3 SV=2	8.0E-35	[6..104]	[7..107]
gi\|25282775 - pir\|\|AD1813 thioredoxin [imported] - Nostoc sp. (strain PCC 7120) gi\|75702591, gi\|... - gi\|75908866\|ref\|YP_323162.1\| thioredoxin [Anabaena variabilis ATCC 29413], gi\|75702591\|gb\|ABA22267.1... gi\|7427614, gi\|1... - gi\|7427614\|pir\|\|TXAI thioredoxin 1 - Anabaena sp, gi\|142118\|gb\|AAA22049.1\| thioredoxin THIO1_NOSSO - Thioredoxin-1 OS=Nostoc sp. (strain ATCC 29151 / PCC 7119) GN=trxA PE=1 SV=2 THIO1_NOSS1 - Thioredoxin-1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=trxA PE=3 SV=2	1.0E-34	[6..104]	[7..107]
TRXM4_ARATH - Thioredoxin M4, chloroplastic OS=Arabidopsis thaliana GN=At3g15360 PE=2 SV=2	1.0E-34	[3..104]	[88..191]
gi\|157830999, gi... - gi\|1827675\|pdb\|1ERV\| Chain , Human Thioredoxin Mutant With Cys 73 Replaced By Ser (Reduced Form), ...	2.0E-34	[1..104]	[1..105]
THIO_CALJA - Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3	2.0E-34	[1..104]	[1..105]
THIO_PIG - Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3	4.0E-34	[1..104]	[1..105]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTQLKSASE YDSALASGDK LVVVDFFATW CGPCKMIAPM IEKFAEQYSD AAFYKLDVDE  60
   61 VSDVAQKAEV SSMPTLIFYK GGKEVTRVVG ANPAAIKQAI ASNV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	257.616428
Match:	1erv__
Description:	Thioredoxin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits