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View Structure Prediction Details

Protein: CIR1
Organism: Saccharomyces cerevisiae
Length: 261 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CIR1.

Description E-value Query
Range
Subject
Range
gi|15027103 - gi|15027103|emb|CAC44789.1| nitrogen fixation protein, FixA [Rhizobium etli]
3.0E-77 [7..260] [1..263]
gi|13474882, gi|... - gi|14025638|dbj|BAB52238.1| nitrogen fixation protein; FixA [Mesorhizobium loti MAFF303099], gi|1347...
3.0E-76 [7..260] [1..263]
gi|1486439 - gi|1486439|emb|CAA92417.1| FixA homologue [Rhizobium sp.]
FIXA_RHISN - Protein FixA OS=Rhizobium sp. (strain NGR234) GN=fixA PE=3 SV=1
2.0E-75 [7..260] [1..263]
ETFB_CLOTS - Electron transfer flavoprotein subunit beta OS=Clostridium thermosaccharolyticum GN=etfB PE=3 SV=1
ETFB_THETC - Electron transfer flavoprotein subunit beta OS=Thermoanaerobacterium thermosaccharolyticum (strain A...
3.0E-74 [7..259] [1..254]
ETFB_MOUSE - (Q9DCW4) Electron transfer flavoprotein beta-subunit (Beta-ETF)
6.0E-74 [7..261] [1..252]
gi|18857708 - gi|18857708|emb|CAD24019.1| FixA protein [Rhizobium leguminosarum bv. viciae]
2.0E-73 [7..258] [1..258]
gi|17986380, gi|... - gi|17986380|ref|NP_539014.1| electron transfer flavoprotein subunit beta [Brucella melitensis 16M], ...
gi|148370449, gi... - gi|148559192|ref|YP_001259788.1| electron transfer flavoprotein, beta subunit [Brucella ovis ATCC 25...
gi|25282861 - pir||AC3264 electron transfer flavoprotein beta-chain [imported] - Brucella melitensis (strain 16M)
gi|163843993, gi... - gi|163843993|ref|YP_001628397.1| electron transfer flavoprotein subunit beta [Brucella suis ATCC 234...
gi|254700609 - gi|254700609|ref|ZP_05162437.1| Electron transfer flavoprotein subunit beta [Brucella suis bv. 5 str...
gi|254704979 - gi|254704979|ref|ZP_05166807.1| Electron transfer flavoprotein subunit beta [Brucella suis bv. 3 str...
gi|161336700, gi... - gi|161619889|ref|YP_001593776.1| electron transfer flavoprotein subunit beta [Brucella canis ATCC 23...
gi|225853407, gi... - gi|225853407|ref|YP_002733640.1| Electron transfer flavoprotein subunit beta [Brucella melitensis AT...
gi|254716029 - gi|254716029|ref|ZP_05177840.1| Electron transfer flavoprotein subunit beta [Brucella ceti M13/05/1]
gi|254708858 - gi|254708858|ref|ZP_05170669.1| Electron transfer flavoprotein subunit beta [Brucella pinnipedialis ...
gi|254713617 - gi|254713617|ref|ZP_05175428.1| Electron transfer flavoprotein subunit beta [Brucella ceti M644/93/1...
gi|23348843, gi|... - gi|23502819|ref|NP_698946.1| electron transfer flavoprotein, beta subunit [Brucella suis 1330], gi|2...
5.0E-73 [7..261] [1..248]
ETFB - electron-transfer-flavoprotein, beta polypeptide
5.0E-73 [6..261] [3..255]
gi|12642187 - gi|12642187|gb|AAK00167.1|AF222753_22 electron-transfer flavoprotein beta-subunit [Bradyrhizobium sp...
6.0E-72 [7..260] [1..263]
ETFB_ARATH - Electron transfer flavoprotein subunit beta, mitochondrial OS=Arabidopsis thaliana GN=ETFB PE=1 SV=1
3.0E-71 [7..257] [1..246]

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Predicted Domain #1
Region A:
Residues: [1-261]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAKQQLRIL VPVKRVVDFQ IKPRVNKTLT GIETSGIKFS INPFDDIAVE EAIRIKEKNK  60
   61 SLVESTHAVS IGSAKAQDIL RNCLAKGIDT CSLIDSVGKE NIEPLAIAKI LKAVVEKKGS 120
  121 NLVLMGKQAI DDDCNNTGQM LAGLLNWPQA TNAAKVEFLD NGRVQVTREI DDGEEVIEAS 180
  181 LPMVITTDLR LNTPRYVGLP KLMKAKKKPI EKLDIAKDFP EINIEPQLKI VSMEEPKTKS 240
  241 PGVKLNSVDE LIEKLKEVKA I

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 650.124002
Match: 1efpB_
Description: Small, beta subunit of electron transfer flavoprotein ETFP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.91619517870463 bayes_pls_golite062009
nucleic acid binding 1.38436645708366 bayes_pls_golite062009
DNA binding 1.35936746868519 bayes_pls_golite062009
ligase activity 1.13489674466232 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.883268134837366 bayes_pls_golite062009
catalytic activity 0.828867994386867 bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds 0.724532065311415 bayes_pls_golite062009
electron carrier activity 0.40873603017227 bayes_pls_golite062009
transferase activity 0.40273889227698 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle