YRC Public Data Repository - Protein Structure Prediction

Protein:	YCH1
Organism:	Saccharomyces cerevisiae
Length:	148 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCH1.

Description	E-value	Query Range	Subject Range
gi\|151943479 - gi\|151943479\|gb\|EDN61790.1\| conserved protein [Saccharomyces cerevisiae YJM789] gi\|190406788 - gi\|190406788\|gb\|EDV10055.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] YCH1_YEAST - CDC25-like phosphatase YCH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCH1 PE=1 SV... YCH1 - Phosphatase with sequence similarity to Cdc25p, Arr2p and Mih1p; member of the single-domain rhodane...	4.0E-43	[1..148]	[1..148]
gi\|7435156 - gi\|7435156\|pir\|\|I66868 cdc25B - rat MPIP2_RAT - M-phase inducer phosphatase 2 OS=Rattus norvegicus GN=Cdc25b PE=1 SV=1	4.0E-40	[8..145]	[405..539]
gi\|11641415, gi\|... - gi\|38679290\|gb\|AAR26469.1\| cell division cycle 25B [Homo sapiens], gi\|119630902\|gb\|EAX10497.1\| hCG39...	7.0E-39	[8..145]	[432..566]
MPIP3_MESAU - M-phase inducer phosphatase 3 OS=Mesocricetus auratus GN=CDC25C PE=2 SV=1	3.0E-38	[8..145]	[246..380]
gi\|248473 - gi\|248473\|gb\|AAB22026.1\| Cdc25M2 [Mus sp.] MPIP2_MOUSE - M-phase inducer phosphatase 2 OS=Mus musculus GN=Cdc25b PE=1 SV=1	3.0E-38	[8..145]	[407..541]
gi\|13874616 - gi\|13874616\|dbj\|BAB46915.1\| hypothetical protein [Macaca fascicularis]	6.0E-38	[8..145]	[299..433]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSYSITNVK YLDPTELHRW MQEGHTTTLR EPFQVVDVRG SDYMGGHIKD GWHYAYSRLK  60
   61 QDPEYLRELK HRLLEKQADG RGALNVIFHC MLSQQRGPSA AMLLLRSLDT AELSRCRLWV 120
  121 LRGGFSRWQS VYGDDESVTA GYLPDLWR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	68.64593
Match:	1cwtA_
Description:	CDC25b
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits