YRC Public Data Repository - Protein Structure Prediction

Protein:	TDH3
Organism:	Saccharomyces cerevisiae
Length:	332 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TDH3.

Description	E-value	Query Range	Subject Range
G3P_MOUSE - Glyceraldehyde-3-phosphate dehydrogenase OS=Mus musculus GN=Gapdh PE=1 SV=2	0.0	[1..330]	[1..330]
G3P_FELCA - Glyceraldehyde-3-phosphate dehydrogenase OS=Felis catus GN=GAPDH PE=2 SV=3	0.0	[1..330]	[1..330]
G3P_CRIGR - Glyceraldehyde-3-phosphate dehydrogenase OS=Cricetulus griseus GN=GAPDH PE=2 SV=2	0.0	[1..330]	[1..330]
GAPDH - glyceraldehyde-3-phosphate dehydrogenase gi\|55637711, gi\|... - gi\|55637711\|ref\|XP_508955.1\| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase isoform 5 [Pan trog... gi\|61362726, gi\|... - gi\|61362731\|gb\|AAX42271.1\| glyceraldehyde-3-phosphate dehydrogenase [synthetic construct], gi\|613627...	0.0	[2..330]	[4..332]
G3P_RAT - Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus norvegicus GN=Gapdh PE=1 SV=3	0.0	[1..330]	[1..330]
G3P_PIG - Glyceraldehyde-3-phosphate dehydrogenase OS=Sus scrofa GN=GAPDH PE=1 SV=4	0.0	[1..330]	[1..330]
G3P_CANLF - Glyceraldehyde-3-phosphate dehydrogenase OS=Canis lupus familiaris GN=GAPDH PE=2 SV=3	0.0	[1..330]	[1..330]
G3P_COTJA - Glyceraldehyde-3-phosphate dehydrogenase OS=Coturnix coturnix japonica GN=GAPDH PE=2 SV=2 gi\|62616, gi\|484434 - gi\|62616\|emb\|CAA79512.1\| glyceraldehydephosphate dehydrogenase [Coturnix coturnix], gi\|484434\|pir\|\|J...	0.0	[1..330]	[1..330]
G3P_RABIT - Glyceraldehyde-3-phosphate dehydrogenase - Oryctolagus cuniculus (Rabbit)	0.0	[1..330]	[1..330]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRVAINGFG RIGRLVMRIA LSRPNVEVVA LNDPFITNDY AAYMFKYDST HGRYAGEVSH  60
   61 DDKHIIVDGK KIATYQERDP ANLPWGSSNV DIAIDSTGVF KELDTAQKHI DAGAKKVVIT 120
  121 APSSTAPMFV MGVNEEKYTS DLKIVSN

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [319-332]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STRVVDLVEH VAKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1429.0
Match:	3gpdR_
Description:	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [148-318]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASCTTNCLAP LAKVINDAFG IEEGLMTTVH SLTATQKTVD GPSHKDWRGG RTASGNIIPS  60
   61 STGAAKAVGK VLPELQGKLT GMAFRVPTVD VSVVDLTVKL NKETTYDEIK KVVKAAAEGK 120
  121 LKGVLGYTED AVVSSDFLGD SHSSIFDASA GIQLSPKFVK LVSWYDNEYG Y

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1429.0
Match:	3gpdR_
Description:	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits