YRC Public Data Repository - Protein Structure Prediction

Protein:	MRPS35
Organism:	Saccharomyces cerevisiae
Length:	345 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPS35.

Description	E-value	Query Range	Subject Range
gi\|190406820 - gi\|190406820\|gb\|EDV10087.1\| hypothetical protein SCRG_00856 [Saccharomyces cerevisiae RM11-1a] gi\|207345043 - gi\|207345043\|gb\|EDZ71990.1\| YGR165Wp-like protein [Saccharomyces cerevisiae AWRI1631] MRPS35 - Mitochondrial ribosomal protein of the small subunit RT35_YEAST - 37S ribosomal protein S35, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN... gi\|151943441 - gi\|151943441\|gb\|EDN61752.1\| mitochondrial ribosomal protein [Saccharomyces cerevisiae YJM789]	0.0	[1..345]	[1..345]
bot1 - mitochondrial ribosomal protein subunit S35 RT35_SCHPO - 37S ribosomal protein S35, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=b...	7.0E-97	[65..324]	[53..303]

Back

Predicted Domain #1

Region A:
Residues: [1-345]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYGLTGTSS KLRGTSSIFS WTQVRHFSRR RIAYPFYPFK KLGRQHPKKH DTNLKTAMRQ  60
   61 FLGPKNYKGE YVMNKYFTVP TNHVPNYIKP DLERGQSLEH PVTKKPLQLR YDGTLGPPPV 120
  121 ENKRLQNIFK DRLLQPFPSN PHCKTNYVLS PQLKQSIFEE ITVEGLSAQQ VSQKYGLKIP 180
  181 RVEAIVKLVS VENSWNRRNR VSSDLKTMDE TLYRMFPVFD SDASFKRENL SEIPVPQKTL 240
  241 ASRFLTIAES EPFGPVDAAH VLELEPAVET LRNLSTVGEH SSGHQQSTNK NTKVIYGELV 300
  301 EGERSQYKFT NAKVGKVGYR YGSGNRDNKK DRRIGFNKLG QMVYI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits