YRC Public Data Repository - Protein Structure Prediction

Protein:	VPS62
Organism:	Saccharomyces cerevisiae
Length:	467 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS62.

Description	E-value	Query Range	Subject Range
TDA6_YEAST - Putative vacuolar protein sorting-associated protein TDA6 OS=Saccharomyces cerevisiae (strain ATCC 2... gi\|190408080 - gi\|190408080\|gb\|EDV11345.1\| vacuolar protein sorting protein 62 [Saccharomyces cerevisiae RM11-1a] TDA6 - Putative protein of unknown function; induced by treatment with 8-methoxypsoralen and UVA irradiatio...	742.0	[0..18]	[466..9]
gi\|49526997, gi\|... - gi\|50290511\|ref\|XP_447687.1\| hypothetical protein CAGL0I10296g [Candida glabrata CBS138], gi\|4952699... gi\|49526997 - gi\|49526997\|emb\|CAG60632.1\| unnamed protein product [Candida glabrata]	507.0	[0..81]	[467..60]
gi\|45198842, gi\|... - gi\|45198842\|ref\|NP_985871.1\| AFR324Wp [Ashbya gossypii ATCC 10895], gi\|44984871\|gb\|AAS53695.1\| AFR32... gi\|44984871 - gi\|44984871\|gb\|AAS53695.1\| AFR324Wp [Ashbya gossypii ATCC 10895]	490.0	[0..64]	[467..55]
gi\|49643249 - gi\|49643249\|emb\|CAG99201.1\| KLLA0E03785p [Kluyveromyces lactis] gi\|49643249, gi\|... - gi\|50308227\|ref\|XP_454114.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643249\|emb\|CAG9920...	467.0	[0..61]	[467..30]
gi\|3142300, gi\|7... - pir\|\|T00964 hypothetical protein F20D22.14 - Arabidopsis thaliana, gi\|3142300\|gb\|AAC16751.1\| Contai...	364.0	[0..67]	[390..1021]
gi\|50418951, gi\|... - gi\|50418951\|ref\|XP_457996.1\| hypothetical protein DEHA0C08030g [Debaryomyces hansenii CBS767], gi\|49...	349.0	[0..58]	[467..50]
gi\|68489428, gi\|... - gi\|68489461\|ref\|XP_711448.1\| potential vacuolar targeting protein [Candida albicans SC5314], gi\|6848... orf19.1800, orf1... - orf19.1800 CGDID:CAL0001572 Assembly 19, Contig19-10126 (34772, 33444) CDS, reverse complemented, tr...	338.0	[0..37]	[461..39]

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Predicted Domain #1

Region A:
Residues: [1-361]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRISKNSHKR QRTRLYFLVT FIIYSIIPCR AVLVPWLDDD PFEATLLEMG DEPWSKDILS  60
   61 STPPLHPSEV TEDNKSLKQR GNVPQYVIDN SPLLHLYSEE KYWPADVKDF VKRFQLRDHS 120
  121 GEKIINEHLR DLSDLQEYYS VELENGTWGR VSSEGTYMTS LDDFDKGPDW LLGEQPEYGT 180
  181 GHIKKAPAVL FVVDKGNGWV DAFWFYFYPF NWGPYIMGSG PWGNHVGDWE HSLVRFYKGE 240
  241 PQYLWMSAHG GGSAYKFEAI EKIKRLRRVD GKLTNEVIKK PLIFSARGTH AHYASVGQHA 300
  301 HDVPFFFMPL SDFTDRGPLW DPSLNYYAYT VTVGEKMTPC GAEETKMGLE WLSFKGAWGD 360
  361 K

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [362-467]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QLRPRDPRQK WCPFQWKYID GPKGPLFKNM ERVSLCQRFK WWNFWKGCPA RRYIKRGEGL  60
   61 DAEKNDLVGD NCGILLYNIR PKWLRSILRF LTWRGSVCFI MDYFTG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits