YRC Public Data Repository - Protein Structure Prediction

Protein:	YGR126W
Organism:	Saccharomyces cerevisiae
Length:	230 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGR126W.

Description	E-value	Query Range	Subject Range
gi\|151943406 - gi\|151943406\|gb\|EDN61717.1\| conserved protein [Saccharomyces cerevisiae YJM789] gi\|207345082 - gi\|207345082\|gb\|EDZ72019.1\| YGR126Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190406856 - gi\|190406856\|gb\|EDV10123.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] YG36_YEAST - Uncharacterized protein YGR126W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YGR126W ... YGR126W - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to bo...	3.0E-91	[1..230]	[1..230]

Back

Predicted Domain #1

Region A:
Residues: [1-230]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVPSVTVTT DNEYEDISSF SSIDSYKPEP FTGFKDSEAP EQPLLKNDTI VGKGQLEDDS  60
   61 NVDDQHRHSD VHSHHSSSTL KRPTSNSIEK MVTHNALEGN SETVDSLKED GLNLNKKALP 120
  121 DITAPVTNSA HDAAFPEEYR LETETGLVKL KTLESLKRED SRVSSTKKEH INDHTDMHST 180
  181 RSKVTTNSQG SSLEPNKLNM AVEKNKKRIE KYQKHKSEKG IKGFFHRIFD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [114-230]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNKKALPDIT APVTNSAHDA AFPEEYRLET ETGLVKLKTL ESLKREDSRV SSTKKEHIND  60
   61 HTDMHSTRSK VTTNSQGSSL EPNKLNMAVE KNKKRIEKYQ KHKSEKGIKG FFHRIFD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits