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View Structure Prediction Details

Protein: RPS23B, RPS23A
Organism: Saccharomyces cerevisiae
Length: 145 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS23B, RPS23A.

Description E-value Query
Range
Subject
Range
gi|187036559, gi... - gi|39585649|emb|CAE59851.1| Hypothetical protein CBG03324 [Caenorhabditis briggsae], gi|187036559|em...
CRE15584, CRE18329 - RP14819 WBGene00071917 locus:Cre-rps-23 status:Predicted, RP14819 WBGene00077068 status:Predicted
gi|157756785 - gi|157756785|ref|XP_001670736.1| Hypothetical protein CBG03324 [Caenorhabditis briggsae AF16]
rps-23 - ribosomal protein S23 status:Confirmed UniProt:Q19877 protein_id:CAA94601.1
5.0E-51 [4..145] [2..143]
RS23_MOUSE - 40S ribosomal protein S23 OS=Mus musculus GN=Rps23 PE=1 SV=3
ENSCJAT00000021893 - null
gi|363744767|ref... - PREDICTED: 40S ribosomal protein S23 [Gallus gallus]
gi|109077827 - gi|109077827|ref|XP_001111446.1| PREDICTED: similar to ribosomal protein S23 [Macaca mulatta]
gi|197129851, gi... - gi|224092240|ref|XP_002190993.1| PREDICTED: putative ribosomal protein S23 [Taeniopygia guttata], gi...
RS23_CHILA - 40S ribosomal protein S23 OS=Chinchilla lanigera GN=RPS23 PE=2 SV=1
gi|187609265, gi... - gi|57084757|ref|XP_536303.1| PREDICTED: similar to ribosomal protein S23 isoform 1 [Canis familiaris...
RS23_BOVIN - 40S ribosomal protein S23 OS=Bos taurus GN=RPS23 PE=2 SV=1
gi|149727004 - gi|149727004|ref|XP_001504690.1| PREDICTED: similar to ribosomal protein S23 [Equus caballus]
tr|G3HIY3|G3HIY3... - 40S ribosomal protein S23 OS=Cricetulus griseus GN=I79_010614 PE=3 SV=1
RS23_RAT - 40S ribosomal protein S23 OS=Rattus norvegicus GN=Rps23 PE=1 SV=3
gi|149629620 - gi|149629620|ref|XP_001511270.1| PREDICTED: similar to yeast ribosomal protein S28 homologue [Ornith...
RPS23 - ribosomal protein S23
gi|55624034 - gi|55624034|ref|XP_517668.1| PREDICTED: similar to yeast ribosomal protein S28 homologue isoform 2 [...
1.0E-50 [4..145] [2..143]
RS23_BRUMA - 40S ribosomal protein S23 OS=Brugia malayi GN=rps-23 PE=2 SV=1
2.0E-50 [4..145] [2..143]
gi|6006399 - gi|6006399|emb|CAB56815.1| ribosomal protein S28 [Aspergillus niger]
2.0E-50 [1..145] [1..145]
RS23_LUMRU - 40S ribosomal protein S23 OS=Lumbricus rubellus GN=RPS23 PE=2 SV=1
2.0E-50 [4..145] [2..143]
RS23_ICTPU - 40S ribosomal protein S23 OS=Ictalurus punctatus GN=rps23 PE=2 SV=1
2.0E-50 [4..145] [2..143]
gi|12846275 - gi|12846275|dbj|BAB27102.1| unnamed protein product [Mus musculus]
2.0E-50 [4..145] [2..143]
RS23_NEUCR - 40S ribosomal protein S23 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 12...
RS23_NEUCR - 40S ribosomal protein S23 OS=Neurospora crassa GN=rps-23 PE=3 SV=1
1.0E-49 [1..145] [1..145]
gi|4493905, gi|1... - gi|4493905|emb|CAB39014.1| 40S ribosomal protein S23, putative [Plasmodium falciparum 3D7], gi|16805...
1.0E-49 [1..145] [1..145]
RS23_CANGA - 40S ribosomal protein S23 OS=Candida glabrata GN=RPS23 PE=3 SV=1
gi|190406865, gi... - gi|190408056|gb|EDV11321.1| ribosomal protein S23B [Saccharomyces cerevisiae RM11-1a], gi|190406865|...
RS23_CANGA - 40S ribosomal protein S23 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / N...
RS23_SACU7 - 40S ribosomal protein S23 OS=Saccharomyces uvarum (strain ATCC 76518 / CBS 7001 / CLIB 283 / NBRC 10...
RS23A_YEAST, RS2... - 40S ribosomal protein S23-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS23B PE=1 ...
RPS23B, RPS23A - Ribosomal protein 28 (rp28) of the small (40S) ribosomal subunit, required for translational accurac...
RS23A_NAUCC, RS2... - 40S ribosomal protein S23-B OS=Naumovozyma castellii (strain ATCC 76901 / CBS 4309 / NBRC 1992 / NRR...
RS23_SACBA - 40S ribosomal protein S23 OS=Saccharomyces bayanus GN=RPS23A PE=3 SV=1
RS23_SACCA - 40S ribosomal protein S23 OS=Saccharomyces castellii GN=RPS23A PE=3 SV=1
gi|151943397 - gi|151943397|gb|EDN61708.1| ribosomal protein S23A [Saccharomyces cerevisiae YJM789]
4.0E-49 [1..145] [1..145]

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Predicted Domain #1
Region A:
Residues: [1-145]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKGKPRGLN SARKLRVHRR NNRWAENNYK KRLLGTAFKS SPFGGSSHAK GIVLEKLGIE  60
   61 SKQPNSAIRK CVRVQLIKNG KKVTAFVPND GCLNFVDEND EVLLAGFGRK GKAKGDIPGV 120
  121 RFKVVKVSGV SLLALWKEKK EKPRS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 595.626727
Match: 1k5xL_
Description: No description for 1k5xL_ was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle