YRC Public Data Repository - Protein Structure Prediction

Protein:	SHY1
Organism:	Saccharomyces cerevisiae
Length:	389 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SHY1.

Description	E-value	Query Range	Subject Range
SHY1_YEAST - Cytochrome oxidase assembly protein SHY1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN... gi\|151943393 - gi\|151943393\|gb\|EDN61704.1\| surf-like protein [Saccharomyces cerevisiae YJM789] gi\|190406869 - gi\|190406869\|gb\|EDV10136.1\| protein SHY1 [Saccharomyces cerevisiae RM11-1a] gi\|207345110 - gi\|207345110\|gb\|EDZ72037.1\| YGR112Wp-like protein [Saccharomyces cerevisiae AWRI1631] SHY1 - Mitochondrial inner membrane protein required for assembly of cytochrome c oxidase (complex IV); ass...	0.0	[1..389]	[1..389]
SURF1 - surfeit 1 gi\|123979840, gi... - gi\|123994603\|gb\|ABM84903.1\| surfeit 1 [synthetic construct], gi\|123979840\|gb\|ABM81749.1\| surfeit 1 [...	1.0E-66	[32..251]	[22..248]
gi\|201083, gi\|73... - gi\|7363455\|ref\|NP_038705.1\| surfeit gene 1 [Mus musculus], gi\|201083\|gb\|AAA40153.1\| surfeit 1 protei...	1.0E-65	[42..252]	[39..255]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	3.0E-65	[42..252]	[39..255]
SURF1_RAT - Surfeit locus protein 1 OS=Rattus norvegicus GN=Surf1 PE=2 SV=1	3.0E-63	[42..286]	[39..304]
SURF1_ARATH - Surfeit locus protein 1 OS=Arabidopsis thaliana GN=SURF1 PE=2 SV=1	8.0E-62	[12..258]	[18..299]
gi\|15155016, gi\|... - gi\|15887493\|ref\|NP_353174.1\| hypothetical protein AGR_C_221 [Agrobacterium tumefaciens str. C58], gi... gi\|25349738 - pir\|\|F97375 surfeit 1 (AF182952) [imported] - Agrobacterium tumefaciens (strain C58, Cereon)	5.0E-61	[43..259]	[27..239]
gi\|225626979, gi... - gi\|225626979\|ref\|ZP_03785018.1\| Surfeit locus protein 1 [Brucella ceti str. Cudo], gi\|225618636\|gb\|E... gi\|25349736 - pir\|\|AF3434 surfeit locus protein 1 [imported] - Brucella melitensis (strain 16M) gi\|254709618 - gi\|254709618\|ref\|ZP_05171429.1\| Surfeit locus protein 1 [Brucella pinnipedialis B2/94] gi\|254712966 - gi\|254712966\|ref\|ZP_05174777.1\| Surfeit locus protein 1 [Brucella ceti M644/93/1] gi\|23501375, gi\|... - gi\|23501375\|ref\|NP_697502.1\| SurF1 family protein [Brucella suis 1330], gi\|23347270\|gb\|AAN29417.1\| S... gi\|254701276 - gi\|254701276\|ref\|ZP_05163104.1\| Surfeit locus protein 1 [Brucella suis bv. 5 str. 513] gi\|17987743, gi\|... - gi\|17987743\|ref\|NP_540377.1\| surfeit locus protein 1 [Brucella melitensis 16M], gi\|17983464\|gb\|AAL52... gi\|254703823 - gi\|254703823\|ref\|ZP_05165651.1\| Surfeit locus protein 1 [Brucella suis bv. 3 str. 686] gi\|254716680 - gi\|254716680\|ref\|ZP_05178491.1\| Surfeit locus protein 1 [Brucella ceti M13/05/1] gi\|163673478, gi... - gi\|163842755\|ref\|YP_001627159.1\| Surfeit locus protein 1 [Brucella suis ATCC 23445], gi\|163673478\|gb...	1.0E-60	[60..259]	[4..201]

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Predicted Domain #1

Region A:
Residues: [1-389]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLGARSTY RWFSIAASIP TKNAIGKSTY LLASRNQQYR GIITSTVDWK PIKTGKSPND  60
   61 DSRRERSFGK KIVLGLMFAM PIISFYLGTW QVRRLKWKTK LIAACETKLT YEPIPLPKSF 120
  121 TPDMCEDWEY RKVILTGHFL HNEEMFVGPR KKNGEKGYFL FTPFIRDDTG EKVLIERGWI 180
  181 SEEKVAPDSR NLHHLSLPQE EHLKVVCLVR PPKKRGSLQW AKKDPNSRLW QVPDIYDMAR 240
  241 SSGCTPIQFQ ALYDMKDHPI IEEHTRNEAS QNNSTSSLWK FWKREPTTAV NGTQAVDNNT 300
  301 SKPRSRQEMP TDQTIEFDER QFIKAGVPIG RKPTIDLKNN HLQYLVTWYG LSFLSTIFLI 360
  361 VALRKAKRGG VVSQDQLMKE KLKHSRKYM

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	293.49485
Match:	PF02104
Description:	SURF1 family

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits