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View Structure Prediction Details

Protein: CLD1
Organism: Saccharomyces cerevisiae
Length: 445 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CLD1.

Description E-value Query
Range
Subject
Range
gi|207345108 - gi|207345108|gb|EDZ72035.1| YGR110Wp-like protein [Saccharomyces cerevisiae AWRI1631]
CLD1_YEAST - Cardiolipin-specific deacylase 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2...
gi|151943391 - gi|151943391|gb|EDN61702.1| conserved protein [Saccharomyces cerevisiae YJM789]
CLD1 - Mitochondrial cardiolipin-specific phospholipase; functions upstream of Taz1p to generate monolyso-c...
1.0E-91 [1..445] [1..445]
gi|15230018, gi|... - gi|6714450|gb|AAF26137.1|AC011620_13 putative epoxide hydrolase [Arabidopsis thaliana], gi|21436463|...
3.0E-50 [109..445] [2..324]
HYES_MOUSE - Bifunctional epoxide hydrolase 2 OS=Mus musculus GN=Ephx2 PE=1 SV=2
3.0E-50 [82..443] [202..542]
gi|10197682 - gi|10197682|gb|AAG14967.1|AF233335_1 soluble epoxide hydrolase [Homo sapiens]
8.0E-50 [82..442] [202..542]
HYES_RAT - Bifunctional epoxide hydrolase 2 OS=Rattus norvegicus GN=Ephx2 PE=1 SV=1
2.0E-49 [82..443] [202..542]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
9.0E-49 [82..443] [202..541]

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Predicted Domain #1
Region A:
Residues: [1-445]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKSTLNSII RRPLKGFQLL RGADSSNTRP QSPRASARDV TEKQILRTPS APTAIPLREI  60
   61 IYRVPSLFPR PLEDSVKDFR DFIKNEDAFQ TELLKTLPFY PTPSESKTAR LIRTVVDDEG 120
  121 NYINEFCIRP RKTSVPEADL KHLVFIHGYG AGLGFFIKNF EDIPLLDNEW CIHAIDLPGY 180
  181 GFSSRPKFPF EYPRDNIHSV QDWFHERIHT WFSKRNLLNR PEKNIVMAHS LGSYLMALYL 240
  241 QKYKESPSFK KLILCSPAGV SYRDFNNTAS EVEKWKPPPW WYVKLWDRNI SPFTLVRNFR 300
  301 QLGSKITSGW SYRRFKHILN GDPEQSKRFE ALHRYAYAIF NKRGSGEYLL SFALKCGGEP 360
  361 RLSLEQQLFD GKKSDILKNS NCDWLWLYGD DDWMDVNGGL RVSRFLKEKL KQKSNVIIVP 420
  421 HSGHHLYLDN YKFFNNILTK EMQKI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 51.045757
Match: 1cqzA_
Description: Epoxide hydrolase, N-terminal domain; Mammalian epoxide hydrolase, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [85-445]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NEDAFQTELL KTLPFYPTPS ESKTARLIRT VVDDEGNYIN EFCIRPRKTS VPEADLKHLV  60
   61 FIHGYGAGLG FFIKNFEDIP LLDNEWCIHA IDLPGYGFSS RPKFPFEYPR DNIHSVQDWF 120
  121 HERIHTWFSK RNLLNRPEKN IVMAHSLGSY LMALYLQKYK ESPSFKKLIL CSPAGVSYRD 180
  181 FNNTASEVEK WKPPPWWYVK LWDRNISPFT LVRNFRQLGS KITSGWSYRR FKHILNGDPE 240
  241 QSKRFEALHR YAYAIFNKRG SGEYLLSFAL KCGGEPRLSL EQQLFDGKKS DILKNSNCDW 300
  301 LWLYGDDDWM DVNGGLRVSR FLKEKLKQKS NVIIVPHSGH HLYLDNYKFF NNILTKEMQK 360
  361 I

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 56.221849
Match: 1s8oA
Description: Human soluble Epoxide Hydrolase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.39629727416851 bayes_pls_golite062009
phospholipase activity 1.05835015160042 bayes_pls_golite062009
hydrolase activity 0.889604807785227 bayes_pls_golite062009
lipase activity 0.849473630399459 bayes_pls_golite062009
carboxylesterase activity 0.424330502936163 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 0.408842908758364 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle