YRC Public Data Repository - Protein Structure Prediction

Protein:	PRP31
Organism:	Saccharomyces cerevisiae
Length:	494 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRP31.

Description	E-value	Query Range	Subject Range
gi\|51830339 - gi\|51830339\|gb\|AAU09731.1\| YGR091W [Saccharomyces cerevisiae]	586.0	[0..1]	[494..1]
CG6876-PA - This gene is referred to in FlyBase by the symbol Dmel\CG6876 (CG6876, FBgn0036487). It is a protein... gi\|220946280 - gi\|220946280\|gb\|ACL85683.1\| CG6876-PA [synthetic construct]	469.0	[0..16]	[491..24]
gi\|7486934, gi\|3... - pir\|\|T02269 hypothetical protein T13D8.6 - Arabidopsis thaliana, gi\|3249066\|gb\|AAC24050.1\| Similar ...	461.0	[0..9]	[494..32]
CE24126 - mRNA splicing protein status:Confirmed UniProt:Q9N592 protein_id:AAF60425.1	444.0	[0..1]	[482..1]
PRP31_MOUSE - U4/U6 small nuclear ribonucleoprotein Prp31 OS=Mus musculus GN=Prpf31 PE=2 SV=2	440.0	[0..24]	[491..33]
gi\|157819227, gi... - gi\|62638824\|ref\|XP_218173.3\| PREDICTED: similar to pre-mRNA processing factor 31 homolog [Rattus nor...	439.0	[0..24]	[491..33]
gi\|40254869, gi\|... - gi\|40254869\|ref\|NP_056444.2\| pre-mRNA processing factor 31 homolog [Homo sapiens], gi\|18249847\|gb\|AA...	439.0	[0..24]	[491..33]

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Predicted Domain #1

Region A:
Residues: [1-406]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSEEDYFDE LEYDLADEVN EEKEDIQTKK LTTVNCQTEK FNPFEILPES IELFRTLALI  60
   61 SPDRLSLSET AQILPKIVDL KRILQQQEID FIKLLPFFNE IIPLIKSNIK LMHNFLISLY 120
  121 SRRFPELSSL IPSPLQYSKV ISILENENYS KNESDELFFH LENKAKLTRE QILVLTMSMK 180
  181 TSFKNKEPLD IKTRTQILEA NSILENLWKL QEDIGQYIAS KISIIAPNVC FLVGPEIAAQ 240
  241 LIAHAGGVLE FSRIPSCNIA SIGKNKHLSH ELHTLESGVR QEGYLFASDM IQKFPVSVHK 300
  301 QMLRMLCAKV SLAARVDAGQ KNGDRNTVLA HKWKAELSKK ARKLSEAPSI SETKALPIPE 360
  361 DQPKKKRAGR KFRKYKEKFR LSHVRQLQNR MEFGKQEQTV LDSYGE

[Run NCBI BLAST on this sequence.]

Detection Method:	ab initio
Confidence:	7.14
Match:
Description:	No description for 1bgxT was found.

Predicted Domain #2

Region A:
Residues: [407-494]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EVGLGMSNTS LQQAVGATSG SRRSAGNQAK LTKVMKHRIS EANQQADEFL ISLGHNTEQP  60
   61 NLSPEMVQMH KKQHTNPEEE TNWFSGHG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits