YRC Public Data Repository - Protein Structure Prediction

Protein:	PAC10
Organism:	Saccharomyces cerevisiae
Length:	199 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PAC10.

Description	E-value	Query Range	Subject Range
gi\|190406902 - gi\|190406902\|gb\|EDV10169.1\| hypothetical protein SCRG_00939 [Saccharomyces cerevisiae RM11-1a] PAC10 - Part of the heteromeric co-chaperone GimC/prefoldin complex, which promotes efficient protein foldin... PFD3_YEAST - Prefoldin subunit 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PAC10 PE=1 SV=1 gi\|151943355 - gi\|151943355\|gb\|EDN61668.1\| prefoldin complex subunit [Saccharomyces cerevisiae YJM789]	8.0E-75	[1..199]	[1..199]
gi\|151555331, gi... - gi\|151555331\|gb\|AAI48717.1\| Von Hippel-Lindau binding protein 1 [synthetic construct], gi\|146327729\|... PFD3_MOUSE - Prefoldin subunit 3 OS=Mus musculus GN=Vbp1 PE=1 SV=2	2.0E-63	[14..194]	[23..196]
gi\|208968043, gi... - gi\|61356220\|gb\|AAX41221.1\| von Hippel-Lindau binding protein 1 [synthetic construct], gi\|208968043\|d... PFD3_PONPY - Prefoldin subunit 3 - Pongo pygmaeus (Orangutan) VBP1 - von Hippel-Lindau binding protein 1 PFD3_PONAB - Prefoldin subunit 3 OS=Pongo abelii GN=VBP1 PE=2 SV=1	2.0E-63	[14..194]	[24..197]
gi\|12230495 - gi\|12230495\|sp\|Q9VGP6.2\|PFD3_DROME RecName: Full=Probable prefoldin subunit 3	4.0E-59	[7..185]	[6..174]
pfd-3 - Human VHL binding protein like status:Confirmed UniProt:O18054 protein_id:CAB04707.1	5.0E-55	[8..195]	[6..185]
PFD3_ARATH - Probable prefoldin subunit 3 OS=Arabidopsis thaliana GN=At5g49510 PE=1 SV=1	1.0E-52	[13..185]	[17..181]
PFD3_SCHPO - Probable prefoldin subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H8.07c P... SPAC3H8.07c - prefoldin subunit 3	1.0E-49	[8..188]	[2..168]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTLFNSTEK NARGIPQAPF IENVNEIIKD PSDFELCFNK FQERLSKYKF MQESKLATIK  60
   61 QLKTRIPDLE NTLKICQSLR NHSDEGDESD EPILLHYQLN DTLYTKAQVD IPEDRADLK

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	10.25
Match:	1fxkC
Description:	Prefoldin alpha subunit
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [120-199]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VGLWLGADVM LEYPIDEAIE LLKKKLADSE QSLTVSTEDV EFLRENITTM EVNCARLYNW  60
   61 DVQRRQDLKQ AQEGTKNLKI

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	10.25
Match:	1fxkC
Description:	Prefoldin alpha subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits