YRC Public Data Repository - Protein Structure Prediction

Protein:	MRPL25
Organism:	Saccharomyces cerevisiae
Length:	157 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPL25.

Description	E-value	Query Range	Subject Range
RM25_YEAST - 54S ribosomal protein L25, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN... gi\|151943353 - gi\|151943353\|gb\|EDN61666.1\| YmL25 [Saccharomyces cerevisiae YJM789] gi\|190406904 - gi\|190406904\|gb\|EDV10171.1\| mitochondrial 60S ribosomal protein L25 [Saccharomyces cerevisiae RM11-1... MRPL25 - Mitochondrial ribosomal protein of the large subunit	1.0E-60	[1..157]	[1..157]
mrpl25 - mitochondrial ribosomal protein subunit L25 RM25_SCHPO - 60S ribosomal protein L25, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=m...	1.0E-41	[4..131]	[6..128]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYKQYFDSL PLKLKSFFQR YPPSIKYSPV STSTKAINAN PFLPNKHPVT QRFHDPKYSL  60
   61 RRMSDVYKLA LRYGVEEFLP PIENTKKLFF EEKYNKKTLM KGVLLPKGHK HELKLNEKLK 120
  121 KREEALKKVD ELIASKKGSK YAKRVEKMKK NQSIGWF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits