YRC Public Data Repository - Protein Structure Prediction

Protein:	YGR066C
Organism:	Saccharomyces cerevisiae
Length:	292 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGR066C.

Description	E-value	Query Range	Subject Range
YG29_YEAST - Uncharacterized protein YGR066C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YGR066C ... gi\|190406912 - gi\|190406912\|gb\|EDV10179.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] YGR066C - Putative protein of unknown function gi\|151943345 - gi\|151943345\|gb\|EDN61658.1\| conserved protein [Saccharomyces cerevisiae YJM789]	0.0	[1..292]	[1..292]
gi\|18676842 - gi\|18676842\|dbj\|BAB85036.1\| unnamed protein product [Homo sapiens]	4.0E-57	[79..274]	[122..286]
gi\|13398295 - gi\|13398295\|emb\|CAC34590.1\| hypothetical protein [Mus musculus]	6.0E-51	[79..268]	[38..196]
SPAC3H1.14 - cytoplasmic vesicle protein, Vid24 family YANE_SCHPO - Uncharacterized protein C3H1.14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H1.14...	6.0E-51	[78..276]	[6..183]
gi\|19168684, gi\|... - gi\|19173017\|ref\|NP_597568.1\| similarity to HYPOTHETICAL PROTEIN YANE_SCHPO [Encephalitozoon cuniculi... gi\|19173017 - gi\|19173017\|ref\|NP_597568.1\| similarity to HYPOTHETICAL PROTEIN YANE_SCHPO [Encephalitozoon cuniculi...	7.0E-46	[79..267]	[24..176]
YLWD_SCHPO - Uncharacterized protein P8A3.13c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAP8A3.1... SPAP8A3.13c - Vid 24 family protein	6.0E-43	[82..276]	[359..535]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	8.0E-40	[120..276]	[3..145]
gi\|15224341, gi\|... - pir\|\|T02534 hypothetical protein At2g37680 [imported] - Arabidopsis thaliana, gi\|3236250\|gb\|AAC2363...	4.0E-38	[85..268]	[15..148]

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Predicted Domain #1

Region A:
Residues: [1-63]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSLNIMGRK FILERAKRND NIEEIYTSAY VSLPSSTDTR LPHFKAKEED CDVYEEGTNL  60
   61 VGK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [64-292]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NAKYTYRSLG RHLDFLRPGL RFGGSQSSKY TYYTVEVKID TVNLPLYKDS RSLDPHVTGT  60
   61 FTIKNLTPVL DKVVTLFEGY VINYNQFPLC SLHWPAEETL DPYMAQRESD CSHWKRFGHF 120
  121 GSDNWSLTER NFGQYNHESA EFMNQRYIYL KWKERFLLDD EEQENLMLDD NHHLEGASFE 180
  181 GFYYVCLDQL TGSVEGYYYH PACELFQKLE LVPTNCDALN TYSSGFEIA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits