| Protein: | RSC1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 928 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RSC1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..928] | [1..928] |
|
|
2.0E-85 | [10..541] | [488..1092] |
|
|
3.0E-82 | [10..537] | [518..1118] |
|
|
1.0E-74 | [9..579] | [14..560] |
|
|
6.0E-66 | [7..531] | [510..1086] |
|
Region A: Residues: [1-87] |
1 11 21 31 41 51
| | | | | |
1 MVEQDNGFLQ KLLKTQYDAV FHLKDENGIE IYPIFNVLPP KKEYPDYYII IRNPISLNTL 60
61 KKRLPHYTSP QDFVNDFAQI PWNAMTY
|
| Detection Method: |  |
| Confidence: | 69.751666 |
| Match: | 1e6iA_ |
| Description: | GCN5 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [88-230] |
1 11 21 31 41 51
| | | | | |
1 NAKDSVIYKY AILLESFIKG KIVHNIRKHY PEVTYPSLGR IPEIFAESMQ PSDLSSNPIN 60
61 TQENDEKAGL NPEMKMAFAK LDSSITERKP TNQDYRMQQK NSPAFPTHSA SITPQPLASP 120
121 TPVVNYANIT SAHPKTHVRR GRP
|
| Detection Method: | |
| Confidence: | 46.917458 |
| Match: | 1eqfA_ |
| Description: | TAFII250 double bromodomain module |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [231-345] |
1 11 21 31 41 51
| | | | | |
1 PVIDLPYVLR IKNILKMMRR EVDQNNKTLT LCFEKLPDRN EEPTYYSVIT DPICLMDIRK 60
61 KVKSRKYRNF HTFEEDFQLM LTNFKLYYSQ DQSNIIRAQL LEKNFNRLVR IELSK
|
| Detection Method: | |
| Confidence: | 46.917458 |
| Match: | 1eqfA_ |
| Description: | TAFII250 double bromodomain module |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [346-538] |
1 11 21 31 41 51
| | | | | |
1 PDEDYLPEGE LRYPLDDVEI NDEKYQIGDW VLLHNPNDIN KPIVGQIFRL WSTTDGNKWL 60
61 NACWYFRPEQ TVHRVDRLFY KNEVMKTGQY RDHPIQDIKG KCYVIHFTRF QRGDPSTKVN 120
121 GPQFVCEFRY NESDKVFNKI RTWKACLPEE LRDQDEPTIP VNGRKFFKYP SPIADLLPAN 180
181 ATLNDKVPEP TEG
|
| Detection Method: | |
| Confidence: | 7.88 |
| Match: | 1m4zA |
| Description: | Origin-recognition complect protein 120kDa subunit, Orc1p |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [539-697] |
1 11 21 31 41 51
| | | | | |
1 APTAPPLVGA VYLGPKLERD DLGEYSTSDD CPRYIIRPND PPEEGKIDYE TGTIITDTLT 60
61 TSSMPRVNSS STIRLPTLKQ TKSIPSSNFR SSSNTPLLHQ NFNQTSNFLK LENMNNSSHN 120
121 LLSHPSVPKF QSPSLLEQSS RSKYHSAKKQ TQLSSTAPK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [698-928] |
1 11 21 31 41 51
| | | | | |
1 KPASKSFTLS SMINTLTAHT SKYNFNHIVI EAPGAFVVPV PMEKNIRTIQ STERFSRSNL 60
61 KNAQNLGNTA INDINTANEQ IIWFKGPGVK ITERVIDSGN DLVRVPLNRW FCKNKRRKLD 120
121 YEDIEEDVME PPNDFSEDMI ANIFNPPPSL NLDMDLNLSP SSNNSSNFMD LSTIASGDND 180
181 GKECDTAEES EDENEDTEDE HEIEDIPTTS AFGLNSSAEY LAFRLREFNK L
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
