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View Structure Prediction Details

Protein: KSS1
Organism: Saccharomyces cerevisiae
Length: 368 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KSS1.

Description E-value Query
Range		 Subject
Range
gi|151943323 - gi|151943323|gb|EDN61636.1| MAP kinase kinase (MEK) [Saccharomyces cerevisiae YJM789]
gi|190406935 - gi|190406935|gb|EDV10202.1| MAP kinase [Saccharomyces cerevisiae RM11-1a]
KSS1_YEAST - Mitogen-activated protein kinase KSS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KS...
KSS1 - Mitogen-activated protein kinase (MAPK) involved in signal transduction pathways that control filame...
gi|207345204 - gi|207345204|gb|EDZ72099.1| YGR040Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 0.0 [1..368] [1..368]
MPK4_ARATH - Mitogen-activated protein kinase 4 OS=Arabidopsis thaliana GN=MPK4 PE=1 SV=2
 0.0 [7..366] [36..370]
gi|13620175 - gi|13620175|emb|CAC36428.1| mitogen activated protein kinase [Gibberella fujikuroi]
 0.0 [2..365] [12..355]
gi|12005890 - gi|12005890|gb|AAG44657.1|AF258529_1 MAP kinase 1 [Gaeumannomyces graminis]
 0.0 [2..365] [13..356]
gi|11275338 - gi|11275338|dbj|BAB18271.1| mitogen-activated protein kinase [Chlamydomonas reinhardtii]
 0.0 [7..367] [52..388]
gi|4580577 - gi|4580577|gb|AAD24428.1|U59214_1 MAP protein kinase MPKA [Emericella nidulans]
 0.0 [2..368] [14..358]
MMK1_MEDSA - Mitogen-activated protein kinase homolog MMK1 OS=Medicago sativa GN=MMK1 PE=1 SV=1
 0.0 [2..366] [43..381]
gi|5007038 - gi|5007038|gb|AAD37790.1|AF149424_1 MAP kinase [Ipomoea batatas]
 0.0 [2..364] [22..358]
NTF4_TOBAC - Mitogen-activated protein kinase homolog NTF4 OS=Nicotiana tabacum GN=NTF4 PE=2 SV=1
 0.0 [2..366] [48..386]

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Predicted Domain #1
Region A:
Residues: [1-62] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARTITFDIP SQYKLVDLIG EGAYGTVCSA IHKPSGIKVA IKKIQPFSKK LFVTRTIREI  60
   61 KL

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [75-96] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ILDKVRPVSI DKLNAVYLVE EL

[Run NCBI BLAST on this sequence.]

Region C:
Residues: [345-368] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEEEEVPIEM LKDMLYDELM KTME

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1085.0
Match: 1erk__
Description: MAP kinase Erk2
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [63-74] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LRYFHEHENI IS

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [97-344] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METDLQKVIN NQNSGFSTLS DDHVQYFTYQ ILRALKSIHS AQVIHRDIKP SNLLLNSNCD  60
   61 LKVCDFGLAR CLASSSDSRE TLVGFMTEYV ATRWYRAPEI MLTFQEYTTA MDIWSCGCIL 120
  121 AEMVSGKPLF PGRDYHHQLW LILEVLGTPS FEDFNQIKSK RAKEYIANLP MRPPLPWETV 180
  181 WSKTDLNPDM IDLLDKMLQF NPDKRISAAE ALRHPYLAMY HDPSDEPEYP PLNLDDEFWK 240
  241 LDNKIMRP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1085.0
Match: 1erk__
Description: MAP kinase Erk2
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle