YRC Public Data Repository - Protein Structure Prediction

Protein:	ORM1
Organism:	Saccharomyces cerevisiae
Length:	222 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ORM1.

Description	E-value	Query Range	Subject Range
ORM1 - Evolutionarily conserved protein, similar to Orm2p, required for resistance to agents that induce un... gi\|151943322 - gi\|151943322\|gb\|EDN61635.1\| conserved protein [Saccharomyces cerevisiae YJM789] ORM1_YEAST - Protein ORM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ORM1 PE=1 SV=1 gi\|190406936 - gi\|190406936\|gb\|EDV10203.1\| protein ORM1 [Saccharomyces cerevisiae RM11-1a]	1.0E-87	[1..222]	[1..222]
SPBC119.09c - ORMDL family protein YBA9_SCHPO - Uncharacterized protein C119.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC119.0...	3.0E-63	[48..210]	[7..168]
ORM1_SACMO - Protein ORM1 OS=Saccharomyces monacensis GN=ORM1 PE=4 SV=1 ORM1_SACMO - Protein ORM1 OS=Saccharomyces pastorianus (strain ATCC 76670 / Carlsberg bottom yeast no.2 / CBS 150...	1.0E-59	[75..222]	[1..148]
gi\|9665157, gi\|2... - gi\|9665157\|gb\|AAF97341.1\|AC023628_22 Unknown protein [Arabidopsis thaliana], pir\|\|E86142 F6F3.4 prot...	1.0E-54	[72..220]	[13..161]
ORML1_MOUSE - ORM1-like protein 1 OS=Mus musculus GN=Ormdl1 PE=2 SV=1	5.0E-53	[71..210]	[8..147]
ORMDL2 - ORM1-like 2 (S. cerevisiae) gi\|190689629, gi... - gi\|190690993\|gb\|ACE87271.1\| ORM1-like 2 (S. cerevisiae) protein [synthetic construct], gi\|190689629\|...	1.0E-52	[71..210]	[8..147]

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Predicted Domain #1

Region A:
Residues: [1-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTELDYQGTA EAASTSYSRN QTDLKPFPSA GSASSSIKTT EPVKDHRRRR SSSIISHVEP  60
   61 ETFEDENDQQ LLPNMNATWV DQRGAWIIHV VIIILLKLFY NLFPGVTTEW SWTLTNMTYV 120
  121 IGSYVMFHLI KGTPFDFNGG AYDNLTMWEQ IDDETLYTPS RKFLISVPIA LFLVSTHYAH 180
  181 YDLKLFSWNC FLTTFGAVVP KLPVTHRLRI SIPGITGRAQ IS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits