YRC Public Data Repository - Protein Structure Prediction

Protein:	RPL26B
Organism:	Saccharomyces cerevisiae
Length:	129 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL26B.

Description	E-value	Query Range	Subject Range
gi\|220948100 - gi\|220948100\|gb\|ACL86593.1\| RpL26-PA [synthetic construct] gi\|195496428, gi... - gi\|195496428\|ref\|XP_002095689.1\| GE19574 [Drosophila yakuba], gi\|195496407\|ref\|XP_002095681.1\| GE195... gi\|194197430, gi... - gi\|195591385\|ref\|XP_002085421.1\| GD14780 [Drosophila simulans], gi\|194197430\|gb\|EDX11006.1\| GD14780 ... gi\|194751754, gi... - gi\|194751754\|ref\|XP_001958190.1\| GF23649 [Drosophila ananassae], gi\|190625472\|gb\|EDV40996.1\| GF23649... gi\|194124515, gi... - gi\|195352261\|ref\|XP_002042631.1\| GM15002 [Drosophila sechellia], gi\|194124515\|gb\|EDW46558.1\| GM15002... RpL26-PA, FBpp03... - The gene Ribosomal protein L26 is referred to in FlyBase by the symbol Dmel\RpL26 (CG6846, FBgn00368...	6.0E-38	[6..126]	[3..124]
gi\|118097329 - gi\|118097329\|ref\|XP_414531.2\| PREDICTED: similar to ribosomal protein L26 isoform 3 [Gallus gallus] gi\|114669145 - gi\|114669145\|ref\|XP_001166961.1\| PREDICTED: similar to ribosomal protein L26 [Pan troglodytes] gi\|27672824, gi\|... - ref\|XP_213346.1\| similar to 60S ribosomal protein L26 [Rattus norvegicus], gi\|157786616\|ref\|NP_0010... gi\|126290843, gi... - gi\|126309103\|ref\|XP_001364106.1\| PREDICTED: similar to ribosomal protein L26 [Monodelphis domestica]... RL26_MOUSE - 60S ribosomal protein L26 OS=Mus musculus GN=Rpl26 PE=1 SV=1 gi\|187609319, gi... - gi\|73991617\|ref\|XP_850899.1\| PREDICTED: similar to 60S ribosomal protein L26 (Silica-induced gene 20... ENSOCUP000000053... - pep:novel chromosome:oryCun2:19:10915724:10920715:1 gene:ENSOCUG00000006538 transcript:ENSOCUT000000... RL26_MACFA - 60S ribosomal protein L26 OS=Macaca fascicularis GN=RPL26 PE=2 SV=1 gi\|67043807 - gi\|67043807\|gb\|AAY64001.1\| ribosomal protein L26 [Pelodiscus sinensis] RPL26 - ribosomal protein L26 RL26_BOVIN - 60S ribosomal protein L26 OS=Bos taurus GN=RPL26 PE=2 SV=1 tr\|M3WES0\|M3WES0... - Ribosomal protein L26 OS=Felis catus GN=RPL26 PE=3 SV=1 gi\|149724295 - gi\|149724295\|ref\|XP_001504871.1\| PREDICTED: similar to ribosomal protein L26 [Equus caballus] ENSCJAT000000429... - null, null, null gi\|149452239 - gi\|149452239\|ref\|XP_001511684.1\| PREDICTED: similar to ribosomal protein L26 [Ornithorhynchus anatin... gi\|109113229, gi... - gi\|109113231\|ref\|XP_001113073.1\| PREDICTED: similar to 60S ribosomal protein L26 (Silica-induced gen... gi\|542168782\|ref... - PREDICTED: 60S ribosomal protein L26-like [Zonotrichia albicollis] gi\|197128180, gi... - gi\|224067443\|ref\|XP_002195826.1\| PREDICTED: putative ribosomal protein L26 variant 2 isoform 1 [Taen...	3.0E-36	[7..126]	[4..124]
gi\|15293919 - gi\|15293919\|gb\|AAK95152.1\|AF401580_1 ribosomal protein L26 [Ictalurus punctatus]	3.0E-35	[7..126]	[4..124]
gi\|57692 - gi\|57692\|emb\|CAA32801.1\| unnamed protein product [Rattus rattus] RL26_RAT - 60S ribosomal protein L26 OS=Rattus norvegicus GN=Rpl26 PE=1 SV=1	4.0E-35	[7..126]	[4..124]
RL261_ARATH - 60S ribosomal protein L26-1 OS=Arabidopsis thaliana GN=RPL26A PE=2 SV=2	1.0E-34	[7..126]	[4..123]
rpl-26 - ribosomal protein L26 like status:Confirmed UniProt:Q19869 protein_id:CAA92674.1	3.0E-34	[7..125]	[4..122]
gi\|190406940 - gi\|190406940\|gb\|EDV10207.1\| ribosomal protein L26B [Saccharomyces cerevisiae RM11-1a] gi\|151943317 - gi\|151943317\|gb\|EDN61630.1\| ribosomal protein L26B [Saccharomyces cerevisiae YJM789] RPL26B - Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl26Ap and has similari...	4.0E-34	[1..129]	[1..129]

Back

Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNYCKTMYV SSDRRKARKA YFTAPSSERR VLLSAPLSKE LRAQYGIKAL PIRRDDEVLV  60
   61 VRGSKKGQEG KISSVYRLKF AVQVDKVTKE KVNGASVPIN LHPSKLVITK LHLDKDRKAL 120
  121 IQRKGGKLE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	511.533179
Match:	1k5yU_
Description:	No description for 1k5yU_ was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits