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View Structure Prediction Details

Protein: GSC2
Organism: Saccharomyces cerevisiae
Length: 1895 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GSC2.

Description E-value Query
Range
Subject
Range
gi|6166503 - gi|6166503|gb|AAF04861.1|AF198090_1 Fks1p [Yarrowia lipolytica]
0.0 [3..1893] [35..1943]
gi|577655 - gi|577655|dbj|BAA07707.1| Gsc2p [Saccharomyces cerevisiae]
0.0 [1..1895] [1..1895]
BGS4_SCHPO - 1,3-beta-glucan synthase component bgs4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bg...
bgs4 - 1,3-beta-glucan synthase subunit Bgs4
0.0 [1..1874] [1..1943]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
0.0 [3..1876] [6..1864]
gi|5007025 - gi|5007025|gb|AAD37783.1|AF148715_1 glucan synthase [Paracoccidioides brasiliensis]
0.0 [6..1876] [5..1880]
gi|2274847 - gi|2274847|dbj|BAA21535.1| beta-1,3-glucan synthase catalytic subunit 1 [Candida albicans]
0.0 [1..1892] [1..1877]
gi|1491929 - gi|1491929|gb|AAC49993.1| 1,3-beta-D-glucan synthase catalytic subunit
gi|49092810, gi|... - gi|67526543|ref|XP_661333.1| hypothetical protein AN3729.2 [Aspergillus nidulans FGSC A4], ref|XP_40...
0.0 [1..1878] [1..1885]
gi|2149093 - gi|2149093|gb|AAB58492.1| fksp [Aspergillus fumigatus]
0.0 [1..1877] [1..1883]

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Predicted Domain #1
Region A:
Residues: [1-233]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYNDPNLNG QYYSNGDGTG DGNYPTYQVT QDQSAYDEYG QPIYTQNQLD DGYYDPNEQY  60
   61 VDGTQFPQGQ DPSQDQGPYN NDASYYNQPP NMMNPSSQDG ENFSDFSSYG PPSGTYPNDQ 120
  121 YTPSQMSYPD QDGSSGASTP YGNGVVNGNG QYYDPNAIEM ALPNDPYPAW TADPQSPLPI 180
  181 EQIEDIFIDL TNKFGFQRDS MRNMFDHFMT LLDSRSSRMS PEQALLSLHA DYI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [234-540]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGDTANYKKW YFAAQLDMDD EIGFRNMKLG KLSRKARKAK KKNKKAMQEA SPEDTEETLN  60
   61 QIEGDNSLEA ADFRWKSKMN QLSPFEMVRQ IALFLLCWGE ANQVRFTPEC LCFIYKCASD 120
  121 YLDSAQCQQR PDPLPEGDFL NRVITPLYRF IRSQVYEIVD GRYVKSEKDH NKVIGYDDVN 180
  181 QLFWYPEGIA KIVMEDGTRL IDLPAEERYL KLGEIPWDDV FFKTYKETRS WLHLVTNFNR 240
  241 IWIMHISVYW MYCAYNAPTF YTHNYQQLVD NQPLAAYKWA TAALGGTVAS LIQVAATLCE 300
  301 WSFVPRK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [541-821]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WAGAQHLSRR FWFLCVIMGI NLGPVIFVFA YDKDTVYSTA AHVVGAVMFF VAVATLVFFS  60
   61 VMPLGGLFTS YMKKSTRSYV ASQTFTASFA PLHGLDRWMS YLVWVTVFAA KYAESYFFLI 120
  121 LSLRDPIRIL STTSMRCTGE YWWGNKICKV QPKIVLGLMI ATDFILFFLD TYLWYIVVNT 180
  181 VFSVGKSFYL GISILTPWRN IFTRLPKRIY SKILATTDME IKYKPKVLIS QIWNAIIISM 240
  241 YREHLLAIDH VQKLLYHQVP SEIEGKRTLR APTFFVSQDD N

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [822-1685]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NFETEFFPRD SEAERRISFF AQSLSTPIPE PLPVDNMPTF TVLTPHYAER ILLSLREIIR  60
   61 EDDQFSRVTL LEYLKQLHPV EWDCFVKDTK ILAEETAAYE NNEDEPEKED ALKSQIDDLP 120
  121 FYCIGFKSAA PEYTLRTRIW ASLRSQTLYR TISGFMNYSR AIKLLYRVEN PEIVQMFGGN 180
  181 ADGLERELEK MARRKFKFLV SMQRLAKFKP HELENAEFLL RAYPDLQIAY LDEEPPLNEG 240
  241 EEPRIYSALI DGHCEILENG RRRPKFRVQL SGNPILGDGK SDNQNHALIF YRGEYIQLID 300
  301 ANQDNYLEEC LKIRSVLAEF EELGIEQIHP YTPGLKYEDQ STNHPVAIVG AREYIFSENS 360
  361 GVLGDVAAGK EQTFGTLFAR TLAQIGGKLH YGHPDFINAT FMTTRGGVSK AQKGLHLNED 420
  421 IYAGMNAVLR GGRIKHCEYY QCGKGRDLGF GTILNFTTKI GAGMGEQMLS REYYYLGTQL 480
  481 PIDRFLTFYY AHPGFHLNNL FIQLSLQMFM LTLVNLHALA HESILCVYDR DKPITDVLYP 540
  541 IGCYNFHPAI DWVRRYTLSI FIVFWIAFVP IVVQELIERG LWKATQRFFR HILSLSPMFE 600
  601 VFAGQIYSSA LLSDIAVGGA RYISTGRGFA TSRIPFSILY SRFAGSAIYM GSRSMLMLLF 660
  661 GTVAHWQAPL LWFWASLSAL IFAPFIFNPH QFAWEDFFLD YRDYIRWLSR GNNKYHRNSW 720
  721 IGYVRMSRSR VTGFKRKLVG DESEKSAGDA SRAHRTNLIM AEIIPCAIYA AGCFIAFTFI 780
  781 NAQTGVKTTD EDRVNSTLRI IICTLAPIVI DIGVLFFCMG LSCCSGPLLG MCCKKTGSVM 840
  841 AGIAHGIAVV VHIVFFIVMW VLEG

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 1000.0
Match: PF02364
Description: 1,3-beta-glucan synthase component

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [1686-1895]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FSFVRMLIGV VTCIQCQRLI FHCMTVLLLT REFKNDHANT AFWTGKWYST GLGYMAWTQP  60
   61 TRELTAKVIE LSEFAADFVL GHVILIFQLP VICIPKIDKF HSIMLFWLKP SRQIRPPIYS 120
  121 LKQARLRKRM VRRYCSLYFL VLIIFAGCIV GPAVASAHVP KDLGSGLTGT FHNLVQPRNV 180
  181 SNNDTGSQMS TYKSHYYTHT PSLKTWSTIK 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [870-961]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ERILLSLREI IREDDQFSRV TLLEYLKQLH PVEWDCFVKD TKILAEETAA YENNEDEPEK  60
   61 EDALKSQIDD LPFYCIGFKS AAPEYTLRTR IW

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [962-1123]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASLRSQTLYR TISGFMNYSR AIKLLYRVEN PEIVQMFGGN ADGLERELEK MARRKFKFLV  60
   61 SMQRLAKFKP HELENAEFLL RAYPDLQIAY LDEEPPLNEG EEPRIYSALI DGHCEILENG 120
  121 RRRPKFRVQL SGNPILGDGK SDNQNHALIF YRGEYIQLID AN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #8
Region A:
Residues: [1124-1256]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QDNYLEECLK IRSVLAEFEE LGIEQIHPYT PGLKYEDQST NHPVAIVGAR EYIFSENSGV  60
   61 LGDVAAGKEQ TFGTLFARTL AQIGGKLHYG HPDFINATFM TTRGGVSKAQ KGLHLNEDIY 120
  121 AGMNAVLRGG RIK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #9
Region A:
Residues: [1257-1446]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HCEYYQCGKG RDLGFGTILN FTTKIGAGMG EQMLSREYYY LGTQLPIDRF LTFYYAHPGF  60
   61 HLNNLFIQLS LQMFMLTLVN LHALAHESIL CVYDRDKPIT DVLYPIGCYN FHPAIDWVRR 120
  121 YTLSIFIVFW IAFVPIVVQE LIERGLWKAT QRFFRHILSL SPMFEVFAGQ IYSSALLSDI 180
  181 AVGGARYIST 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #10
Region A:
Residues: [1447-1685]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRGFATSRIP FSILYSRFAG SAIYMGSRSM LMLLFGTVAH WQAPLLWFWA SLSALIFAPF  60
   61 IFNPHQFAWE DFFLDYRDYI RWLSRGNNKY HRNSWIGYVR MSRSRVTGFK RKLVGDESEK 120
  121 SAGDASRAHR TNLIMAEIIP CAIYAAGCFI AFTFINAQTG VKTTDEDRVN STLRIIICTL 180
  181 APIVIDIGVL FFCMGLSCCS GPLLGMCCKK TGSVMAGIAH GIAVVVHIVF FIVMWVLEG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #11
Region A:
Residues: [1686-1895]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FSFVRMLIGV VTCIQCQRLI FHCMTVLLLT REFKNDHANT AFWTGKWYST GLGYMAWTQP  60
   61 TRELTAKVIE LSEFAADFVL GHVILIFQLP VICIPKIDKF HSIMLFWLKP SRQIRPPIYS 120
  121 LKQARLRKRM VRRYCSLYFL VLIIFAGCIV GPAVASAHVP KDLGSGLTGT FHNLVQPRNV 180
  181 SNNDTGSQMS TYKSHYYTHT PSLKTWSTIK 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle