YRC Public Data Repository - Protein Structure Prediction

Protein:	MSP1
Organism:	Saccharomyces cerevisiae
Length:	362 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSP1.

Description	E-value	Query Range	Subject Range
Y1297_ARCFU - Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 ... Y1297_ARCFU, YC9... - (O28972) Cell division cycle protein 48 homolog AF1297, Cell division cycle protein 48 homolog AF_12...	0.0	[3..361]	[355..719]
gi\|18977335, gi\|... - gi\|18977335\|ref\|NP_578692.1\| cell division protein CDC48 [Pyrococcus furiosus DSM 3638], gi\|18893012...	0.0	[4..361]	[439..811]
gi\|3257095, gi\|1... - gi\|3257095\|dbj\|BAA29778.1\| 840aa long hypothetical cell division control protein (transitional endop... gi\|7435754 - pir\|\|H71114 probable cell division control protein (transitional endoplasmic reticulum ATPase) - Pyr...	0.0	[12..361]	[461..814]
gi\|15920578, gi\|... - gi\|15920578\|ref\|NP_376247.1\| hypothetical protein ST0376 [Sulfolobus tokodaii str. 7], gi\|15621361\|d...	0.0	[3..360]	[352..732]
gi\|13813572, gi\|... - gi\|15897351\|ref\|NP_341956.1\| AAA ATPase family protein [Sulfolobus solfataricus P2], gi\|13813572\|gb\|... gi\|25289959 - pir\|\|C90186 AAA family ATPase [imported] - Sulfolobus solfataricus	0.0	[2..360]	[373..753]
gi\|7435762, gi\|5... - pir\|\|D75046 transitional endoplasmic reticulum atpase PAB1478 - Pyrococcus abyssi (strain Orsay), gi... gi\|5458778, gi\|1... - gi\|5458778\|emb\|CAB50265.1\| ATPase of the AAA+ family [Pyrococcus abyssi GE5], gi\|14521559\|ref\|NP_127...	0.0	[12..361]	[461..814]
SAV_SULAC - Protein SAV OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIM... SAV_SULAC - Protein SAV OS=Sulfolobus acidocaldarius GN=sav PE=3 SV=2	0.0	[3..360]	[385..765]
CDC48_SOYBN - Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2 SV=1	0.0	[7..360]	[392..757]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRKFDLKTI TDLSVLVGTG ISLYYLVSRL LNDVESGPLS GKSRESKAKQ SLQWEKLVKR  60
   61 SPALAEVTLD AYERTILSSI VTPDEIN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	478.0103
Match:	1e32A_
Description:	Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [88-257]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ITFQDIGGLD PLISDLHESV IYPLMMPEVY SNSPLLQAPS GVLLYGPPGC GKTMLAKALA  60
   61 KESGANFISI RMSSIMDKWY GESNKIVDAM FSLANKLQPC IIFIDEIDSF LRERSSTDHE 120
  121 VTATLKAEFM TLWDGLLNNG RVMIIGATNR INDIDDAFLR RLPKRFLVSL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	478.0103
Match:	1e32A_
Description:	Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [258-362]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PGSDQRYKIL SVLLKDTKLD EDEFDLQLIA DNTKGFSGSD LKELCREAAL DAAKEYIKQK  60
   61 RQLIDSGTID VNDTSSLKIR PLKTKDFTKK LRMDATSTLS SQPLD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	478.0103
Match:	1e32A_
Description:	Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits