YRC Public Data Repository - Protein Structure Prediction

Protein:	RPS25A
Organism:	Saccharomyces cerevisiae
Length:	108 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS25A.

Description	E-value	Query Range	Subject Range
gi\|114572319 - gi\|114572319\|ref\|XP_514173.2\| PREDICTED: similar to ribosomal protein S25 [Pan troglodytes]	149.0	[0..6]	[107..77]
gi\|109018521 - gi\|109018521\|ref\|XP_001108187.1\| PREDICTED: similar to 40S ribosomal protein S25 [Macaca mulatta]	147.0	[0..6]	[107..197]
gi\|73955048 - gi\|73955048\|ref\|XP_536549.2\| PREDICTED: similar to 40S ribosomal protein S25 [Canis familiaris]	140.0	[0..1]	[107..75]
gi\|125778350, gi... - gi\|54639683\|gb\|EAL29085.1\| GA19768-PA [Drosophila pseudoobscura], gi\|125778350\|ref\|XP_001359933.1\| G...	139.0	[0..1]	[108..1]
gi\|108884721, gi... - gi\|157103245\|ref\|XP_001647889.1\| ribosomal protein S25, putative [Aedes aegypti], gi\|157103243\|ref\|X...	134.0	[0..1]	[108..83]
gi\|47188265 - gi\|47188265\|emb\|CAF87311.1\| unnamed protein product [Tetraodon nigroviridis]	132.0	[0..1]	[107..14]
gi\|52346074, gi\|... - gi\|52346074\|ref\|NP_001005084.1\| ribosomal protein S25 [Xenopus (Silurana) tropicalis], gi\|50370198\|g... gi\|147901123, gi... - gi\|49670424\|gb\|AAH75187.1\| MGC82151 protein [Xenopus laevis], gi\|147901123\|ref\|NP_001086475.1\| MGC82...	130.0	[0..1]	[107..1]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPKQQLSKA AKAAAALAGG KKSKKKWSKK SMKDRAQHAV ILDQEKYDRI LKEVPTYRYV  60
   61 SVSVLVDRLK IGGSLARIAL RHLEKEGIIK PISKHSKQAI YTRATASE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.21
Match:	2j5oA
Description:	No description for 2j5oA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits