YRC Public Data Repository - Protein Structure Prediction

Protein:	STF2
Organism:	Saccharomyces cerevisiae
Length:	84 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for STF2.

Description	E-value	Query Range	Subject Range
gi\|223960 - gi\|223960\|prf\|\|1006225A ATP synthase regulating factor	143.0	[0..2]	[84..1]
gi\|190405379 - gi\|190405379\|gb\|EDV08646.1\| ATPase-stabilizing factor 15 kDa protein [Saccharomyces cerevisiae RM11-... TMA10 - Protein of unknown function that associates with ribosomes gi\|151940856 - gi\|151940856\|gb\|EDN59238.1\| translation machinery associated protein [Saccharomyces cerevisiae YJM78... TMA10_YEAST - Translation machinery-associated protein 10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)... ORFP:15629 - YLR327C, Contig c148 13609-13869	141.0	[0..1]	[83..1]
gi\|45199023, gi\|... - gi\|45199023\|ref\|NP_986052.1\| AFR505Cp [Ashbya gossypii ATCC 10895], gi\|44985098\|gb\|AAS53876.1\| AFR50... gi\|44985098 - gi\|44985098\|gb\|AAS53876.1\| AFR505Cp [Ashbya gossypii ATCC 10895]	122.0	[0..1]	[83..1]
gi\|49525656 - gi\|49525656\|emb\|CAG59273.1\| unnamed protein product [Candida glabrata] gi\|50287839, gi\|... - gi\|50287839\|ref\|XP_446349.1\| unnamed protein product [Candida glabrata], gi\|49525656\|emb\|CAG59273.1\|...	122.0	[0..1]	[82..1]
gi\|49642139 - gi\|49642139\|emb\|CAH01857.1\| KLLA0C18117p [Kluyveromyces lactis] gi\|49642139, gi\|... - gi\|50306089\|ref\|XP_453006.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642139\|emb\|CAH0185...	108.0	[0..1]	[72..1]
gi\|49652296, gi\|... - gi\|50406425\|ref\|XP_456632.1\| hypothetical protein DEHA0A07150g [Debaryomyces hansenii CBS767], gi\|49...	83.0	[0..1]	[84..1]
gi\|50548079, gi\|... - gi\|50548079\|ref\|XP_501509.1\| YALI0C06237p [Yarrowia lipolytica], gi\|49647376\|emb\|CAG81810.1\| unnamed... gi\|49647376 - gi\|49647376\|emb\|CAG81810.1\| YALI0C06237p [Yarrowia lipolytica]	62.0	[0..10]	[77..3]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRTNKWTER EGKADPKYFS HTGNYGESPN HIKKQGSGKG NWGKPGDEID DLIDNGEIPP  60
   61 VFKKDRRGSN LQSHEQKFEN VQKE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.377	a.3.1	Cytochrome c
View	Download	0.377	a.3.1	Cytochrome c
View	Download	0.324	d.106.1	Sterol carrier protein, SCP
View	Download	0.232	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.205	a.5.8	Description not found.
View	Download	0.204	c.47.1	Thioredoxin-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits