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View Structure Prediction Details

Protein: VEL1
Organism: Saccharomyces cerevisiae
Length: 206 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VEL1.

Description E-value Query
Range
Subject
Range
VEL1 - Protein of unknown function; highly induced in zinc-depleted conditions and has increased expression...
VEL1_YEAST - Protein VEL1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VEL1 PE=1 SV=1
0.0 [1..206] [1..206]
SPBPB2B2.15, SPB... - conserved fungal protein, conserved fungal protein
YHEF_SCHPO - VEL1-related protein BPB2B2.15/BC1348.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=...
2.0E-91 [6..206] [6..203]

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Predicted Domain #1
Region A:
Residues: [1-206]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFLSIFTFF SVLISVATTV RFDLTNVTCK GLHGPHCGTY VMEVVGQNGT FLGQSTFVGA  60
   61 DVLTESAGDA WARYLGQETR FLPKLTTIAS NETKNFSPLI FTTNINTCNP QSIGDAMVPF 120
  121 ANTVTGEIEY NSWADTADNA SFITGLANQL FNSTDYGVQV ASCYPNFASV ILSTPAVNIF 180
  181 GKDDTLPDYC TAIQLKAVCP PEAGFD

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Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
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Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle