| Protein: | RAI1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 387 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAI1.
| Description | E-value | Query Range |
Subject Range |
|
|
418.0 | [0..13] | [381..38] |
|
|
414.0 | [0..13] | [381..38] |
|
|
403.0 | [0..13] | [381..38] |
|
|
403.0 | [0..13] | [381..38] |
|
|
400.0 | [0..13] | [381..38] |
|
Region A: Residues: [1-303] |
1 11 21 31 41 51
| | | | | |
1 MGVSANLFVK QRGSTTALKQ PKEIGFYSRT KDEEYLISDD TNLNYYYLPD AELDRKLDLS 60
61 SGFQKFKDYY KDFEDRCSLR GLLETIESSE RHKGKKINAD IITFRGIARK LISCAFDSPS 120
121 FNTVDLRIVS FNGQLFIKEV PEAVNAAKAS SATEAGRNIN QDLNVFTGYK FETLATLSNP 180
181 LQYTPREVIE KRTKRIVSHG DEYISVVRTG VGNCKLILGA EVDCIFDFKE NGRDNLKHYA 240
241 ELKCTQQVAN ISDTHKFERK LFRTWLQCFL VGIPRIIYGF KDDHYVLKTV EEFSTEEVPV 300
301 LLK
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [304-387] |
1 11 21 31 41 51
| | | | | |
1 NNNPQVGSAC LEAIKWYGLL TEWLLKMIPR DEDPHSQIRA FKLVFENNHL RLSEIEESDE 60
61 EYSGLIDGEH ILSNGFKEWR KSLK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.801 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.801 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.795 | d.58.49 | YajQ-like |
| View | Download | 0.795 | d.58.49 | YajQ-like |
| View | Download | 0.691 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.665 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.589 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.570 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.541 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
