YRC Public Data Repository - Protein Structure Prediction

Protein:	VID30
Organism:	Saccharomyces cerevisiae
Length:	958 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VID30.

Description	E-value	Query Range	Subject Range
gi\|151943591 - gi\|151943591\|gb\|EDN61901.1\| vacuolar import and degradation protein [Saccharomyces cerevisiae YJM789... VID30 - Protein involved in proteasome-dependent catabolite degradation of fructose-1,6-bisphosphatase (FBPa... gi\|190407161 - gi\|190407161\|gb\|EDV10428.1\| vacuolar import and degradation protein VID30 [Saccharomyces cerevisiae ... gi\|207345547 - gi\|207345547\|gb\|EDZ72330.1\| YGL227Wp-like protein [Saccharomyces cerevisiae AWRI1631] VID30_YEAST - Vacuolar import and degradation protein 30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ...	0.0	[1..958]	[1..958]
RANB9_MOUSE - Ran-binding protein 9 OS=Mus musculus GN=Ranbp9 PE=1 SV=1	2.0E-65	[440..654]	[105..329]
RANBP9 - RAN binding protein 9	2.0E-65	[440..654]	[180..404]
RANB9_XENLA - Ran-binding protein 9 OS=Xenopus laevis GN=ranbp9 PE=2 SV=1	2.0E-64	[440..654]	[35..256]
gi\|20465559, gi\|... - gi\|30681041\|ref\|NP_192672.2\| SPla/RYanodine receptor (SPRY) domain-containing protein [Arabidopsis t...	2.0E-63	[441..669]	[45..279]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	8.0E-60	[427..641]	[1019..1260]

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Predicted Domain #1

Region A:
Residues: [1-47]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEYMDDVDR EFINCLFPSY LLQQPVAYDL WILYLQHRKL FHKLKNT

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [270-349]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QYYPPDQSPS SSFSSPRVSS GNDKNDNEAT NVLSNSGSKK KNSMIPDIYK ILGYFLPSRW  60
   61 QAQPNNSLQL SQDGITHLQP

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	10.3
Match:	1l8mA
Description:	No description for 1l8mA was found.

Predicted Domain #2

Region A:
Residues: [48-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLINADENPT GVGMGRTKLT ALTRKEIWSK LMNLGVLGTI SFEAVNDDYL IQVYKYFYPD  60
   61 VNDFTLRFGV KDS

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	10.3
Match:	1l8mA
Description:	No description for 1l8mA was found.

Predicted Domain #3

Region A:
Residues: [121-199]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKNSVRVMKA SSDMRKNAQE LLEPVLSERE MALNSNTSLE NDRNDDDDDD DDDDDDDDDD  60
   61 DDDDDESDLE SLEGEVDTD

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	10.3
Match:	1l8mA
Description:	No description for 1l8mA was found.

Predicted Domain #4

Region A:
Residues: [200-269]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDDNNEGDGS DNHEEGGEEG SRGADADVSS AQQRAERVAD PWIYQRSRSA INIETESRNL  60
   61 WDTSDKNSGL

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	10.3
Match:	1l8mA
Description:	No description for 1l8mA was found.

Predicted Domain #5

Region A:
Residues: [350-420]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPDYHSYMTY ERSSASSAST RNRLRTSFEN SGKVDFAVTW ANKSLPDNKL TIFYYEIKVL  60
   61 SVTSTESAEN S

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.869	0.037	regulation of nitrogen utilization	g.41.3	Zinc beta-ribbon
View	Download	0.886	0.037	regulation of nitrogen utilization	g.41.3	Zinc beta-ribbon
View	Download	0.856	0.037	regulation of nitrogen utilization	d.95.2	Homing endonucleases
View	Download	0.803	0.037	regulation of nitrogen utilization	b.34.5	Translation proteins SH3-like domain
View	Download	0.798	0.037	regulation of nitrogen utilization	d.17.1	Cystatin/monellin
View	Download	0.705	0.037	regulation of nitrogen utilization	d.49.1	Signal recognition particle alu RNA binding heterodimer, SRP9/14
View	Download	0.804	0.037	regulation of nitrogen utilization	g.41.3	Zinc beta-ribbon
View	Download	0.802	0.037	regulation of nitrogen utilization	d.17.2	Copper amine oxidase, domains 1 and 2
View	Download	0.736	0.037	regulation of nitrogen utilization	d.68.3	SirA-like
View	Download	0.732	0.037	regulation of nitrogen utilization	d.17.2	Copper amine oxidase, domains 1 and 2
View	Download	0.727	0.037	regulation of nitrogen utilization	b.1.1	Immunoglobulin
View	Download	0.716	0.037	regulation of nitrogen utilization	d.68.7	R3H domain
View	Download	0.708	0.037	regulation of nitrogen utilization	d.17.2	Copper amine oxidase, domains 1 and 2
View	Download	0.706	0.037	regulation of nitrogen utilization	d.17.5	Uracil-DNA glycosylase inhibitor protein
View	Download	0.701	0.037	regulation of nitrogen utilization	g.41.3	Zinc beta-ribbon
View	Download	0.699	0.037	regulation of nitrogen utilization	d.9.2	Description not found.
View	Download	0.696	0.037	regulation of nitrogen utilization	b.122.1	PUA domain-like
View	Download	0.695	0.037	regulation of nitrogen utilization	d.17.2	Copper amine oxidase, domains 1 and 2
View	Download	0.686	0.037	regulation of nitrogen utilization	d.50.1	dsRNA-binding domain-like
View	Download	0.679	0.037	regulation of nitrogen utilization	c.47.1	Thioredoxin-like
View	Download	0.669	0.037	regulation of nitrogen utilization	g.18.1	Complement control module/SCR domain
View	Download	0.668	0.037	regulation of nitrogen utilization	d.50.1	dsRNA-binding domain-like
View	Download	0.659	0.037	regulation of nitrogen utilization	b.24.1	Hyaluronate lyase-like, C-terminal domain
View	Download	0.653	0.037	regulation of nitrogen utilization	d.74.2	C-terminal domain of arginine repressor
View	Download	0.651	0.037	regulation of nitrogen utilization	d.58.18	Regulatory domain in the aminoacid metabolism
View	Download	0.650	0.037	regulation of nitrogen utilization	d.58.5	GlnB-like
View	Download	0.648	0.037	regulation of nitrogen utilization	d.50.1	dsRNA-binding domain-like
View	Download	0.645	0.037	regulation of nitrogen utilization	d.54.1	Enolase N-terminal domain-like
View	Download	0.642	0.037	regulation of nitrogen utilization	b.48.1	mu transposase, C-terminal domain
View	Download	0.639	0.037	regulation of nitrogen utilization	d.58.3	Protease propeptides/inhibitors
View	Download	0.625	0.037	regulation of nitrogen utilization	d.50.1	dsRNA-binding domain-like
View	Download	0.623	0.037	regulation of nitrogen utilization	d.58.35	Pseudouridine synthase
View	Download	0.620	0.037	regulation of nitrogen utilization	d.50.1	dsRNA-binding domain-like
View	Download	0.602	0.037	regulation of nitrogen utilization	d.68.3	SirA-like
View	Download	0.592	0.037	regulation of nitrogen utilization	d.50.1	dsRNA-binding domain-like
View	Download	0.592	0.037	regulation of nitrogen utilization	d.68.5	C-terminal domain of ProRS
View	Download	0.578	0.037	regulation of nitrogen utilization	d.58.23	Probable ACP-binding domain of malonyl-CoA ACP transacylase
View	Download	0.566	0.037	regulation of nitrogen utilization	d.50.1	dsRNA-binding domain-like
View	Download	0.562	0.037	regulation of nitrogen utilization	b.40.4	Nucleic acid-binding proteins
View	Download	0.560	0.037	regulation of nitrogen utilization	d.50.1	dsRNA-binding domain-like
View	Download	0.557	0.037	regulation of nitrogen utilization	g.18.1	Complement control module/SCR domain
View	Download	0.556	0.037	regulation of nitrogen utilization	c.47.1	Thioredoxin-like
View	Download	0.554	0.037	regulation of nitrogen utilization	b.1.1	Immunoglobulin
View	Download	0.547	0.037	regulation of nitrogen utilization	d.17.2	Copper amine oxidase, domains 1 and 2
View	Download	0.546	0.037	regulation of nitrogen utilization	d.50.2	Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
View	Download	0.544	0.037	regulation of nitrogen utilization	d.17.2	Copper amine oxidase, domains 1 and 2
View	Download	0.540	0.037	regulation of nitrogen utilization	d.68.1	Translation initiation factor IF3, C-terminal domain
View	Download	0.539	0.037	regulation of nitrogen utilization	d.17.5	Uracil-DNA glycosylase inhibitor protein
View	Download	0.537	0.037	regulation of nitrogen utilization	d.50.1	dsRNA-binding domain-like
View	Download	0.536	0.037	regulation of nitrogen utilization	d.49.1	Signal recognition particle alu RNA binding heterodimer, SRP9/14
View	Download	0.536	0.037	regulation of nitrogen utilization	d.50.1	dsRNA-binding domain-like
View	Download	0.536	0.037	regulation of nitrogen utilization	d.50.1	dsRNA-binding domain-like
View	Download	0.534	0.037	regulation of nitrogen utilization	b.71.1	Glycosyl hydrolase domain
View	Download	0.533	0.037	regulation of nitrogen utilization	d.74.2	C-terminal domain of arginine repressor
View	Download	0.530	0.037	regulation of nitrogen utilization	d.9.2	Description not found.
View	Download	0.525	0.037	regulation of nitrogen utilization	d.237.1	Hypothetical protein YjiA, C-terminal domain
View	Download	0.521	0.037	regulation of nitrogen utilization	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.519	0.037	regulation of nitrogen utilization	d.58.18	Regulatory domain in the aminoacid metabolism
View	Download	0.517	0.037	regulation of nitrogen utilization	d.17.2	Copper amine oxidase, domains 1 and 2
View	Download	0.510	0.037	regulation of nitrogen utilization	d.50.1	dsRNA-binding domain-like
View	Download	0.502	0.037	regulation of nitrogen utilization	g.18.1	Complement control module/SCR domain
View	Download	0.501	0.037	regulation of nitrogen utilization	d.17.2	Copper amine oxidase, domains 1 and 2
View	Download	0.500	0.037	regulation of nitrogen utilization	d.50.1	dsRNA-binding domain-like
View	Download	0.498	0.037	regulation of nitrogen utilization	d.50.1	dsRNA-binding domain-like
View	Download	0.496	0.037	regulation of nitrogen utilization	d.52.1	Alpha-lytic protease prodomain
View	Download	0.492	0.037	regulation of nitrogen utilization	d.17.1	Cystatin/monellin
View	Download	0.491	0.037	regulation of nitrogen utilization	d.17.5	Uracil-DNA glycosylase inhibitor protein
View	Download	0.490	0.037	regulation of nitrogen utilization	d.9.2	Description not found.
View	Download	0.486	0.037	regulation of nitrogen utilization	d.15.7	Immunoglobulin-binding domains
View	Download	0.480	0.037	regulation of nitrogen utilization	d.50.1	dsRNA-binding domain-like
View	Download	0.480	0.037	regulation of nitrogen utilization	d.17.5	Uracil-DNA glycosylase inhibitor protein
View	Download	0.473	0.037	regulation of nitrogen utilization	d.17.5	Uracil-DNA glycosylase inhibitor protein
View	Download	0.466	0.037	regulation of nitrogen utilization	d.17.2	Copper amine oxidase, domains 1 and 2
View	Download	0.464	0.037	regulation of nitrogen utilization	d.17.2	Copper amine oxidase, domains 1 and 2
View	Download	0.460	0.037	regulation of nitrogen utilization	d.105.1	Clathrin adaptor appendage, alpha and beta chain-specific domain
View	Download	0.458	0.037	regulation of nitrogen utilization	c.47.1	Thioredoxin-like
View	Download	0.456	0.037	regulation of nitrogen utilization	d.95.1	Glucose permease domain IIB
View	Download	0.448	0.037	regulation of nitrogen utilization	d.17.5	Uracil-DNA glycosylase inhibitor protein
View	Download	0.443	0.037	regulation of nitrogen utilization	g.18.1	Complement control module/SCR domain
View	Download	0.443	0.037	regulation of nitrogen utilization	g.18.1	Complement control module/SCR domain
View	Download	0.440	0.037	regulation of nitrogen utilization	c.47.1	Thioredoxin-like
View	Download	0.440	0.037	regulation of nitrogen utilization	d.58.35	Pseudouridine synthase
View	Download	0.437	0.037	regulation of nitrogen utilization	a.56.1	CO dehydrogenase ISP C-domain like
View	Download	0.437	0.037	regulation of nitrogen utilization	d.95.2	Homing endonucleases
View	Download	0.436	0.037	regulation of nitrogen utilization	b.105.1	Penicillin-binding protein 5, C-terminal domain
View	Download	0.435	0.037	regulation of nitrogen utilization	d.200.1	Integrin beta tail domain
View	Download	0.431	0.037	regulation of nitrogen utilization	d.58.7	RNA-binding domain, RBD
View	Download	0.431	0.037	regulation of nitrogen utilization	d.9.1	Interleukin 8-like chemokines
View	Download	0.430	0.037	regulation of nitrogen utilization	d.50.1	dsRNA-binding domain-like
View	Download	0.425	0.037	regulation of nitrogen utilization	d.17.2	Copper amine oxidase, domains 1 and 2
View	Download	0.425	0.037	regulation of nitrogen utilization	b.40.4	Nucleic acid-binding proteins
View	Download	0.425	0.037	regulation of nitrogen utilization	c.47.1	Thioredoxin-like
View	Download	0.421	0.037	regulation of nitrogen utilization	d.17.5	Uracil-DNA glycosylase inhibitor protein
View	Download	0.421	0.037	regulation of nitrogen utilization	d.17.2	Copper amine oxidase, domains 1 and 2
View	Download	0.420	0.037	regulation of nitrogen utilization	d.52.1	Alpha-lytic protease prodomain
View	Download	0.417	0.037	regulation of nitrogen utilization	d.49.1	Signal recognition particle alu RNA binding heterodimer, SRP9/14
View	Download	0.415	0.037	regulation of nitrogen utilization	g.28.1	Thyroglobulin type-1 domain
View	Download	0.415	0.037	regulation of nitrogen utilization	c.51.1	Anticodon-binding domain of Class II aaRS
View	Download	0.414	0.037	regulation of nitrogen utilization	d.50.1	dsRNA-binding domain-like
View	Download	0.404	0.037	regulation of nitrogen utilization	d.169.1	C-type lectin-like
View	Download	0.401	0.037	regulation of nitrogen utilization	d.17.5	Uracil-DNA glycosylase inhibitor protein
View	Download	0.400	0.037	regulation of nitrogen utilization	d.50.1	dsRNA-binding domain-like
View	Download	0.399	0.037	regulation of nitrogen utilization	d.58.35	Pseudouridine synthase
View	Download	0.395	0.037	regulation of nitrogen utilization	d.40.1	CI-2 family of serine protease inhibitors
View	Download	0.394	0.037	regulation of nitrogen utilization	d.50.1	dsRNA-binding domain-like
View	Download	0.393	0.037	regulation of nitrogen utilization	d.49.1	Signal recognition particle alu RNA binding heterodimer, SRP9/14
View	Download	0.393	0.037	regulation of nitrogen utilization	b.34.4	Electron transport accessory proteins
View	Download	0.392	0.037	regulation of nitrogen utilization	d.200.1	Integrin beta tail domain
View	Download	0.392	0.037	regulation of nitrogen utilization	d.1.1	Microbial ribonucleases
View	Download	0.389	0.037	regulation of nitrogen utilization	d.50.1	dsRNA-binding domain-like
View	Download	0.389	0.037	regulation of nitrogen utilization	d.54.1	Enolase N-terminal domain-like
View	Download	0.378	0.037	regulation of nitrogen utilization	d.50.1	dsRNA-binding domain-like
View	Download	0.377	0.037	regulation of nitrogen utilization	d.68.5	C-terminal domain of ProRS
View	Download	0.376	0.037	regulation of nitrogen utilization	d.17.2	Copper amine oxidase, domains 1 and 2
View	Download	0.375	0.037	regulation of nitrogen utilization	g.18.1	Complement control module/SCR domain
View	Download	0.374	0.037	regulation of nitrogen utilization	d.58.11	EF-G/eEF-2 domains III and V
View	Download	0.373	0.037	regulation of nitrogen utilization	b.34.5	Translation proteins SH3-like domain
View	Download	0.367	0.037	regulation of nitrogen utilization	d.17.5	Uracil-DNA glycosylase inhibitor protein
View	Download	0.365	0.037	regulation of nitrogen utilization	b.48.1	mu transposase, C-terminal domain
View	Download	0.364	0.037	regulation of nitrogen utilization	d.109.1	Actin depolymerizing proteins
View	Download	0.363	0.037	regulation of nitrogen utilization	d.58.12	eEF-1beta-like
View	Download	0.360	0.037	regulation of nitrogen utilization	g.41.3	Zinc beta-ribbon
View	Download	0.359	0.037	regulation of nitrogen utilization	d.17.2	Copper amine oxidase, domains 1 and 2
View	Download	0.359	0.037	regulation of nitrogen utilization	d.17.2	Copper amine oxidase, domains 1 and 2
View	Download	0.358	0.037	regulation of nitrogen utilization	d.17.1	Cystatin/monellin
View	Download	0.355	0.037	regulation of nitrogen utilization	d.17.2	Copper amine oxidase, domains 1 and 2
View	Download	0.354	0.037	regulation of nitrogen utilization	d.58.4	Dimeric alpha+beta barrel
View	Download	0.351	0.037	regulation of nitrogen utilization	d.17.2	Copper amine oxidase, domains 1 and 2
View	Download	0.349	0.037	regulation of nitrogen utilization	b.34.5	Translation proteins SH3-like domain
View	Download	0.348	0.037	regulation of nitrogen utilization	d.58.18	Regulatory domain in the aminoacid metabolism
View	Download	0.344	0.037	regulation of nitrogen utilization	c.47.1	Thioredoxin-like
View	Download	0.342	0.037	regulation of nitrogen utilization	b.61.4	Quinohemoprotein amine dehydrogenase A chain, domain 3
View	Download	0.340	0.037	regulation of nitrogen utilization	d.58.18	Regulatory domain in the aminoacid metabolism
View	Download	0.338	0.037	regulation of nitrogen utilization	d.17.5	Uracil-DNA glycosylase inhibitor protein
View	Download	0.336	0.037	regulation of nitrogen utilization	b.1.2	Fibronectin type III
View	Download	0.334	0.037	regulation of nitrogen utilization	d.58.12	eEF-1beta-like
View	Download	0.332	0.037	regulation of nitrogen utilization	d.68.7	R3H domain
View	Download	0.332	0.037	regulation of nitrogen utilization	d.93.1	SH2 domain
View	Download	0.332	0.037	regulation of nitrogen utilization	d.15.1	Ubiquitin-like
View	Download	0.325	0.037	regulation of nitrogen utilization	d.17.5	Uracil-DNA glycosylase inhibitor protein
View	Download	0.324	0.037	regulation of nitrogen utilization	d.50.1	dsRNA-binding domain-like
View	Download	0.320	0.037	regulation of nitrogen utilization	c.47.2	RNA 3'-terminal phosphate cyclase, RPTC, insert domain
View	Download	0.319	0.037	regulation of nitrogen utilization	d.16.1	FAD-linked reductases, C-terminal domain
View	Download	0.317	0.037	regulation of nitrogen utilization	d.17.2	Copper amine oxidase, domains 1 and 2
View	Download	0.316	0.037	regulation of nitrogen utilization	d.71.1	Cell division protein MinE topological specificity domain
View	Download	0.313	0.037	regulation of nitrogen utilization	c.47.2	RNA 3'-terminal phosphate cyclase, RPTC, insert domain
View	Download	0.308	0.037	regulation of nitrogen utilization	d.17.5	Uracil-DNA glycosylase inhibitor protein
View	Download	0.306	0.037	regulation of nitrogen utilization	d.58.7	RNA-binding domain, RBD
View	Download	0.306	0.037	regulation of nitrogen utilization	d.17.2	Copper amine oxidase, domains 1 and 2
View	Download	0.302	0.037	regulation of nitrogen utilization	g.10.1	Hairpin loop containing domain-like
View	Download	0.302	0.037	regulation of nitrogen utilization	d.204.1	Ribosome binding protein Y (YfiA homologue)
View	Download	0.299	0.037	regulation of nitrogen utilization	d.50.1	dsRNA-binding domain-like
View	Download	0.295	0.037	regulation of nitrogen utilization	d.237.1	Hypothetical protein YjiA, C-terminal domain
View	Download	0.292	0.037	regulation of nitrogen utilization	d.169.1	C-type lectin-like
View	Download	0.286	0.037	regulation of nitrogen utilization	d.15.2	CAD & PB1 domains
View	Download	0.282	0.037	regulation of nitrogen utilization	d.58.1	4Fe-4S ferredoxins
View	Download	0.280	0.037	regulation of nitrogen utilization	b.36.1	PDZ domain-like
View	Download	0.273	0.037	regulation of nitrogen utilization	g.41.3	Zinc beta-ribbon
View	Download	0.270	0.037	regulation of nitrogen utilization	c.51.1	Anticodon-binding domain of Class II aaRS
View	Download	0.267	0.037	regulation of nitrogen utilization	d.201.1	SRP19
View	Download	0.265	0.037	regulation of nitrogen utilization	b.1.1	Immunoglobulin
View	Download	0.263	0.037	regulation of nitrogen utilization	d.17.2	Copper amine oxidase, domains 1 and 2
View	Download	0.262	0.037	regulation of nitrogen utilization	d.15.2	CAD & PB1 domains
View	Download	0.262	0.037	regulation of nitrogen utilization	b.61.4	Quinohemoprotein amine dehydrogenase A chain, domain 3
View	Download	0.261	0.037	regulation of nitrogen utilization	b.55.1	PH domain-like
View	Download	0.255	0.037	regulation of nitrogen utilization	b.1.1	Immunoglobulin
View	Download	0.251	0.037	regulation of nitrogen utilization	c.47.1	Thioredoxin-like
View	Download	0.251	0.037	regulation of nitrogen utilization	b.38.1	Sm-like ribonucleoproteins
View	Download	0.250	0.037	regulation of nitrogen utilization	d.129.1	TATA-box binding protein-like
View	Download	0.250	0.037	regulation of nitrogen utilization	b.1.14	Invasin/intimin cell-adhesion fragments
View	Download	0.249	0.037	regulation of nitrogen utilization	d.58.12	eEF-1beta-like
View	Download	0.245	0.037	regulation of nitrogen utilization	c.47.1	Thioredoxin-like
View	Download	0.245	0.037	regulation of nitrogen utilization	d.68.4	YhbY-like
View	Download	0.245	0.037	regulation of nitrogen utilization	d.93.1	SH2 domain
View	Download	0.243	0.037	regulation of nitrogen utilization	d.49.1	Signal recognition particle alu RNA binding heterodimer, SRP9/14
View	Download	0.241	0.037	regulation of nitrogen utilization	d.201.1	SRP19
View	Download	0.238	0.037	regulation of nitrogen utilization	d.1.1	Microbial ribonucleases
View	Download	0.237	0.037	regulation of nitrogen utilization	g.41.3	Zinc beta-ribbon
View	Download	0.230	0.037	regulation of nitrogen utilization	d.237.1	Hypothetical protein YjiA, C-terminal domain
View	Download	0.230	0.037	regulation of nitrogen utilization	g.3.7	Scorpion toxin-like
View	Download	0.228	0.037	regulation of nitrogen utilization	d.169.1	C-type lectin-like
View	Download	0.224	0.037	regulation of nitrogen utilization	d.169.1	C-type lectin-like
View	Download	0.224	0.037	regulation of nitrogen utilization	d.169.1	C-type lectin-like
View	Download	0.222	0.037	regulation of nitrogen utilization	d.20.1	UBC-like
View	Download	0.218	0.037	regulation of nitrogen utilization	d.71.1	Cell division protein MinE topological specificity domain
View	Download	0.217	0.037	regulation of nitrogen utilization	d.17.2	Copper amine oxidase, domains 1 and 2
View	Download	0.211	0.037	regulation of nitrogen utilization	b.1.2	Fibronectin type III
View	Download	0.209	0.037	regulation of nitrogen utilization	d.17.2	Copper amine oxidase, domains 1 and 2
View	Download	0.209	0.037	regulation of nitrogen utilization	b.1.5	Transglutaminase, two C-terminal domains
View	Download	0.208	0.037	regulation of nitrogen utilization	c.47.1	Thioredoxin-like
View	Download	0.207	0.037	regulation of nitrogen utilization	c.15.1	BRCT domain
View	Download	0.205	0.037	regulation of nitrogen utilization	d.58.5	GlnB-like
View	Download	0.203	0.037	regulation of nitrogen utilization	d.1.1	Microbial ribonucleases
View	Download	0.202	0.037	regulation of nitrogen utilization	b.1.10	Clathrin adaptor appendage domain
View	Download	0.202	0.037	regulation of nitrogen utilization	d.15.1	Ubiquitin-like
View	Download	0.201	0.037	regulation of nitrogen utilization	d.169.1	C-type lectin-like

Predicted Domain #6

Region A:
Residues: [421-672]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NIVIGYKLVE NELMEATTKK SVSRSSVAGS SSSLGGSNNM SSNRVPSTSF TMEGTQRRDY  60
   61 IYEGGVSAMS LNVDGSINKC QKYGFDLNVF GYCGFDGLIT NSTEQSKEYA KPFGRDDVIG 120
  121 CGINFIDGSI FFTKNGIHLG NAFTDLNDLE FVPYVALRPG NSIKTNFGLN EDFVFDIIGY 180
  181 QDKWKSLAYE HICRGRQMDV SIEEFDSDES EEDETENGPE ENKSTNVNED LMDIDQEDGA 240
  241 AGNKDTKKLN DE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #7

Region A:
Residues: [673-958]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KDNNLKFLLG EDNRFIDGKL VRPDVNNINN LSVDDGSLPN TLNVMINDYL IHEGLVDVAK  60
   61 GFLKDLQKDA VNVNGQHSES KDVIRHNERQ IMKEERMVKI RQELRYLINK GQISKCINYI 120
  121 DNEIPDLLKN NLELVFELKL ANYLVMIKKS SSKDDDEIEN LILKGQELSN EFIYDTKIPQ 180
  181 SLRDRFSGQL SNVSALLAYS NPLVEAPKEI SGYLSDEYLQ ERLFQVSNNT ILTFLHKDSE 240
  241 CALENVISNT RAMLSTLLEY NAFGSTNSSD PRYYKAINFD EDVLNL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits