YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: SKI8
Organism: Saccharomyces cerevisiae
Length: 397 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SKI8.

Description E-value Query
Range
Subject
Range
gi|17225206 - gi|17225206|gb|AAL37299.1|AF323583_1 beta transducin-like protein HET-E2C*4 [Podospora anserina]
2.0E-93 [2..396] [911..1251]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=...
gi|25530855 - pir||AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)
5.0E-90 [2..396] [1144..1484]

Back

Predicted Domain #1
Region A:
Residues: [1-397]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKVFIATAN AGKAHDADIF SVSACNSFTV SCSGDGYLKV WDNKLLDNEN PKDKSYSHFV  60
   61 HKSGLHHVDV LQAIERDAFE LCLVATTSFS GDLLFYRITR EDETKKVIFE KLDLLDSDMK 120
  121 KHSFWALKWG ASNDRLLSHR LVATDVKGTT YIWKFHPFAD ESNSLTLNWS PTLELQGTVE 180
  181 SPMTPSQFAT SVDISERGLI ATGFNNGTVQ ISELSTLRPL YNFESQHSMI NNSNSIRSVK 240
  241 FSPQGSLLAI AHDSNSFGCI TLYETEFGER IGSLSVPTHS SQASLGEFAH SSWVMSLSFN 300
  301 DSGETLCSAG WDGKLRFWDV KTKERITTLN MHCDDIEIEE DILAVDEHGD SLAEPGVFDV 360
  361 KFLKKGWRSG MGADLNESLC CVCLDRSIRW FREAGGK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 61.0
Match: 1gg2B_
Description: beta1-subunit of the signal-transducing G protein heterotrimer
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
3.12192428374026 bayes_pls_golite062009
binding 2.42570478946173 bayes_pls_golite062009
RNA binding 2.1927334052131 bayes_pls_golite062009
transcription regulator activity 1.95667720244696 bayes_pls_golite062009
nucleic acid binding 1.90457914882449 bayes_pls_golite062009
general RNA polymerase II transcription factor activity 1.7032681012791 bayes_pls_golite062009
structural molecule activity 1.47448876401574 bayes_pls_golite062009
DNA binding 1.38475369554616 bayes_pls_golite062009
protein binding 1.21879977456466 bayes_pls_golite062009
transcription factor activity 0.804334981068351 bayes_pls_golite062009
cytoskeletal protein binding 0.722742354759599 bayes_pls_golite062009
DNA-dependent ATPase activity 0.625780732991652 bayes_pls_golite062009
transcription repressor activity 0.560226369775279 bayes_pls_golite062009
DNA polymerase activity 0.48827205019881 bayes_pls_golite062009
transcription factor binding 0.412844855996155 bayes_pls_golite062009
snoRNA binding 0.347797037104681 bayes_pls_golite062009
ubiquitin-protein ligase activity 0.2578464839973 bayes_pls_golite062009
transcription cofactor activity 0.19391619547146 bayes_pls_golite062009
DNA helicase activity 0.0403785360444822 bayes_pls_golite062009
transcription corepressor activity 0.00954741955203087 bayes_pls_golite062009
actin binding 0.00606924241186668 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle