| Protein: | MDS3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1487 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MDS3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1479] | [1..1594] |
|
|
7.0E-67 | [576..793] | [62..257] |
|
|
8.0E-60 | [107..462] | [29..413] |
|
|
7.0E-52 | [45..331] | [141..407] |
|
Region A: Residues: [1-88] |
1 11 21 31 41 51
| | | | | |
1 MPLLQPSTCF CYPLKLPPLP LTSDSNEFDE CARKRLTLDY RTGSAVTLTR SNIFVHGGLT 60
61 IPLNLPVVNS MQLQKELILF FAKEKNNG
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.341 | g.52.1 | Inhibitor of apoptosis (IAP) repeat |
| View | Download | 0.471 | c.84.1 | Phosphoglucomutase, first 3 domains |
| View | Download | 0.339 | b.101.1 | Ribonuclease domain of colicin E3 |
| View | Download | 0.336 | a.69.3 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain |
| View | Download | 0.422 | d.82.1 | Copper amine oxidase, domain N |
| View | Download | 0.327 | b.1.1 | Immunoglobulin |
| View | Download | 0.289 | d.50.3 | PI-Pfui intein middle domain |
| View | Download | 0.263 | d.58.17 | Metal-binding domain |
| View | Download | 0.243 | d.146.1 | Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain |
| View | Download | 0.228 | a.39.1 | EF-hand |
| View | Download | 0.225 | a.118.8 | TPR-like |
|
Region A: Residues: [89-334] |
1 11 21 31 41 51
| | | | | |
1 SSFRNLNEWI SKETFFLDLM SRTWYRVKTS FDQRTEELLK AESSSAKADN DTNEIRTDIK 60
61 KGKSLESPLK ERLFHSLCYL DGCLYIFGGL TVSPQSGYEL IATNELWKLD LNTKKWSLLS 120
121 DDPQIARRFN HTMHVKNENN DNRDTKLIIV GGLNNMDQPV KKIDIYNISQ NCWHPKTIPK 180
181 QPMEITTNVN GIPLALSKDQ NFSILVENNE ANVPALAFYM RSDQIDEYLG KDSSKIKENS 240
241 PIVALP
|
| Detection Method: | |
| Confidence: | 4.522879 |
| Match: | 1gof__ |
| Description: | Galactose oxidase, C-terminal domain; Galactose oxidase, N-terminal domain; Galactose oxidase, central domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [335-553] |
1 11 21 31 41 51
| | | | | |
1 LLSESQGIRM PSNPALPKKL LNVPYELLAP TGDYFGFNII IGGFHPNYQS SNFHCFIYDI 60
61 NSGKWSRVRT ACPDCDINKH RFWRVFVWKS HHQTILLGTK TDDYYSPSVQ RFDHLSTFGL 120
121 PLVNIFNKTI QLPHHKISAS SLPIPIENFA KHKDTPLKKV SFTSSATSQF ENYIRYIAPP 180
181 LEMSSIQSVF PPYAMVLGKD ALEIYGKPLS DFEFITSEG
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [554-793] |
1 11 21 31 41 51
| | | | | |
1 DSIGIPCYLL RKRWGRYFDM LLSQSYTKVC ADYETTDTQS TLIKFSPHSS RNSSKAVRQE 60
61 GRLSSSGSLD NYFEKNFPIF ARTSVSEAQN TQPQVANADA KAPNTPSTSD EPSSSSSSDL 120
121 YSTPHYQRNN DEEDDEDPVS PKPVSKSNSI YRPIRKTESS STTSSSNGMI FRVPFKEKAA 180
181 VTSNTEALLE SNLSLQELSR RRSSLMSIPS GELLRSSISE AEHQRRASHP LTSSPLFEDS 240
241
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [794-1487] |
1 11 21 31 41 51
| | | | | |
1 GTPCGKQLQQ LQQHTIQNPH NHLSPRRFSR SARSSISYVS SSSDRRGNSI SSRSTSDSFG 60
61 TPPVLGVLNV PLPPQTREPN EPPPPCPAMS TGSNTRRSNT LTDYMHSNKA SPFSSRRSSH 120
121 IGRRSSTPET ENAFSATPRA SLDGQMLGKS LKEGSTSQYT QPRMNSFPKA NETIQTPTSS 180
181 NNEWSRQSVT SNTDSFDSLQ SNFALELEPL LTPRSLYMPW PTSTVRAFAE FFYTGQVNSK 240
241 WLLAPVALDL LVMAKIYEIP LLYKLILEVL YSILAKKEES LSLICTSLME TFRTKTLNSY 300
301 KGDEEKTNTY LTSNDNYQEL LKLKVSLENI DNGYYDPDLL RKQSRAQSSS TQESSGSANG 360
361 EKTATGAGSL ETSSTNVPTV FAGGPRDSHN SVGSIGFPNS MNIQGSRRST SGFSPRVKMK 420
421 SSLSKEIDPK TFYEEYEPKE GKSFDDNDDQ QTNIGSFNLH LFDMNYGSIS SSSTNSISSS 480
481 DLEEKEEQEQ LQDLLEIERE DSAEILDARF RNKEDDKVTK DISNDKKRNY LPHEKNNLKA 540
541 KEGKETRDVR EEEEEFDFGL GMLSLNKIKR EAKHVDKVDD SVDPLFKSSA FPQSPIRAYG 600
601 STTRTSSASG KPFRDNRSFN AFSVLTLENM ASANALPPVD YVIKSIYRTT VLVNDIRLMV 660
661 RCMDCIELSK NLRALKKKTM EDISKLKGIS KPSP
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [794-884] |
1 11 21 31 41 51
| | | | | |
1 GTPCGKQLQQ LQQHTIQNPH NHLSPRRFSR SARSSISYVS SSSDRRGNSI SSRSTSDSFG 60
61 TPPVLGVLNV PLPPQTREPN EPPPPCPAMS T
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [885-959] |
1 11 21 31 41 51
| | | | | |
1 GSNTRRSNTL TDYMHSNKAS PFSSRRSSHI GRRSSTPETE NAFSATPRAS LDGQMLGKSL 60
61 KEGSTSQYTQ PRMNS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [960-1194] |
1 11 21 31 41 51
| | | | | |
1 FPKANETIQT PTSSNNEWSR QSVTSNTDSF DSLQSNFALE LEPLLTPRSL YMPWPTSTVR 60
61 AFAEFFYTGQ VNSKWLLAPV ALDLLVMAKI YEIPLLYKLI LEVLYSILAK KEESLSLICT 120
121 SLMETFRTKT LNSYKGDEEK TNTYLTSNDN YQELLKLKVS LENIDNGYYD PDLLRKQSRA 180
181 QSSSTQESSG SANGEKTATG AGSLETSSTN VPTVFAGGPR DSHNSVGSIG FPNSM
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1195-1326] |
1 11 21 31 41 51
| | | | | |
1 NIQGSRRSTS GFSPRVKMKS SLSKEIDPKT FYEEYEPKEG KSFDDNDDQQ TNIGSFNLHL 60
61 FDMNYGSISS SSTNSISSSD LEEKEEQEQL QDLLEIERED SAEILDARFR NKEDDKVTKD 120
121 ISNDKKRNYL PH
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1327-1487] |
1 11 21 31 41 51
| | | | | |
1 EKNNLKAKEG KETRDVREEE EEFDFGLGML SLNKIKREAK HVDKVDDSVD PLFKSSAFPQ 60
61 SPIRAYGSTT RTSSASGKPF RDNRSFNAFS VLTLENMASA NALPPVDYVI KSIYRTTVLV 120
121 NDIRLMVRCM DCIELSKNLR ALKKKTMEDI SKLKGISKPS P
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
