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View Structure Prediction Details

Protein: MPT5
Organism: Saccharomyces cerevisiae
Length: 859 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MPT5.

Description E-value Query
Range
Subject
Range
MPT5 - Member of the Puf family of RNA-binding proteins; binds to mRNAs encoding chromatin modifiers and sp...
MPT5_YEAST - Suppressor protein MPT5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MPT5 PE=1 SV=2
0.0 [1..859] [1..859]
gi|12082247 - gi|12082247|dbj|BAB20864.1| pumilio [Xenopus laevis]
0.0 [4..614] [27..573]
PUM1 - pumilio homolog 1 (Drosophila)
0.0 [3..614] [638..1183]
PUM2_MOUSE - Pumilio homolog 2 OS=Mus musculus GN=Pum2 PE=1 SV=2
0.0 [4..614] [517..1063]

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Predicted Domain #1
Region A:
Residues: [1-181]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINNEPFPSA DSASILTTST SNNSLMSYNH QPQLSINSVQ SLLEPVTPPP LGQMNNKRNH  60
   61 QKAHSLDLSG FNQFISSTQS PLALMNNTST SNSANSFSPN PNAASNSTGL SASMANPPAI 120
  121 LPLINEFDLE MDGPRRKSSH DFTVVAPSNS GVNTSSLIME TPSSSVTPAA SLRNFSNSNN 180
  181 A

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [182-328]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASKCGVDNSS FGLSSSTSSS MVEISALPLR DLDYIKLATD QFGCRFLQKK LETPSESNMV  60
   61 RDLMYEQIKP FFLDLILDPF GNYLVQKLCD YLTAEQKTLL IQTIYPNVFQ ISINQYGTRS 120
  121 LQKIIDTVDN EVQIDLIIKG FSQEFTS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 465.0
Match: 1ib2A_
Description: Pumilio 1
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [329-429]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IEQVVTLIND LNGNHVIQKC IFKFSPSKFG FIIDAIVEQN NIITISTHKH GCCVLQKLLS  60
   61 VCTLQQIFKI SVKIVQFLPG LINDQFGNYI IQFLLDIKEL D

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 465.0
Match: 1ib2A_
Description: Pumilio 1
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [430-628]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FYLLAELFNR LSNELCQLSC LKFSSNVVEK FIKKLFRIIT GFIVNNNGGA SQRTAVASDD  60
   61 VINASMNILL TTIDIFTVNL NVLIRDNFGN YALQTLLDVK NYSPLLAYNK NSNAIGQNSS 120
  121 STLNYGNFCN DFSLKIGNLI VLTKELLPSI KTTSYAKKIK LKVKAYAEAT GIPFTDISPQ 180
  181 VTAMSHNNLQ TINNENKNP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 465.0
Match: 1ib2A_
Description: Pumilio 1
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [629-859]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HNKNSHNHNH NHNHNHAHNN NNNNNQKSHT RHFSLPANAY HRRSNSSVTN NFSNQYAQDQ  60
   61 KIHSPQQIMN FNQNAYPSMG APSFNSQTNP PLVSHNSLQN FDNRQFANLM AHPNSAAPIH 120
  121 SFSSSNITNV NPNVSRGFKQ PGFMMNETDK INANHFSPYS NANSQNFNES FVPRMQYQTE 180
  181 GANWDSSLSM KSQHIGQGPY NQVNMSRNAS ISNMPAMNTA RTSDELQFTL P

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle