YRC Public Data Repository - Protein Structure Prediction

Protein:	SUA5
Organism:	Saccharomyces cerevisiae
Length:	426 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SUA5.

Description	E-value	Query Range	Subject Range
YWLC_BACSU - Probable tRNA threonylcarbamoyladenosine biosynthesis protein YwlC OS=Bacillus subtilis GN=ywlC PE=3... gi\|221320895 - gi\|221320895\|ref\|ZP_03602189.1\| hypothetical protein BsubsJ_19840 [Bacillus subtilis subsp. subtilis... gi\|221325179 - gi\|221325179\|ref\|ZP_03606473.1\| hypothetical protein BsubsS_20001 [Bacillus subtilis subsp. subtilis... gi\|221315984 - gi\|221315984\|ref\|ZP_03597789.1\| hypothetical protein BsubsN3_19897 [Bacillus subtilis subsp. subtili... SUA5_BACSU - Threonylcarbamoyl-AMP synthase OS=Bacillus subtilis (strain 168) GN=ywlC PE=1 SV=1	379.0	[0..44]	[425..12]
SUA5_SCHPO - Threonylcarbamoyl-AMP synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sua5 PE=3 S... SPCC895.03c - SUA5 /yciO /yrdC family	376.0	[0..17]	[420..2]
gi\|7445335, gi\|5... - pir\|\|F75007 sua5 related protein PAB1302 - Pyrococcus abyssi (strain Orsay), gi\|5459014\|emb\|CAB50500... SUA5_PYRAB - Threonylcarbamoyl-AMP synthase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=sua5 PE=1 SV=1	375.0	[0..40]	[425..3]
gi\|25305359 - pir\|\|F97254 probable translation factor (SUA5) [imported] - Clostridium acetobutylicum gi\|15025929, gi\|... - gi\|15896136\|ref\|NP_349485.1\| translation factor (SUA5) [Clostridium acetobutylicum ATCC 824], gi\|150...	375.0	[0..36]	[424..1]
gi\|255026494 - gi\|255026494\|ref\|ZP_05298480.1\| hypothetical protein LmonocytFSL_09443 [Listeria monocytogenes FSL J... gi\|255028536 - gi\|255028536\|ref\|ZP_05300487.1\| hypothetical protein LmonL_03806 [Listeria monocytogenes LO28] gi\|224503219 - gi\|224503219\|ref\|ZP_03671526.1\| hypothetical protein LmonFR_11993 [Listeria monocytogenes FSL R2-561... gi\|16804579 - gi\|16804579\|ref\|NP_466064.1\| hypothetical protein lmo2541 [Listeria monocytogenes EGD-e] gi\|25305364, gi\|... - pir\|\|AE1392 yeast translation initiation protein homolog lmo2541 [imported] - Listeria monocytogenes...	375.0	[0..42]	[424..7]
gi\|254932217, gi... - gi\|254932217\|ref\|ZP_05265576.1\| yeast translation initiation protein [Listeria monocytogenes HPB2262... gi\|226225089, gi... - gi\|226225089\|ref\|YP_002759196.1\| yeast translation initiation protein [Listeria monocytogenes Clip81... gi\|254853930 - gi\|254853930\|ref\|ZP_05243278.1\| yeast translation initiation protein [Listeria monocytogenes FSL R2-... gi\|46881985, gi\|... - gi\|46908713\|ref\|YP_015102.1\| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes str. 4b F236... gi\|254825336 - gi\|254825336\|ref\|ZP_05230337.1\| yeast translation initiation protein [Listeria monocytogenes FSL J1-... gi\|47017319, gi\|... - gi\|47094309\|ref\|ZP_00232012.1\| Sua5/YciO/YrdC/YwlC family protein [Listeria monocytogenes str. 4b H7... gi\|254993431 - gi\|254993431\|ref\|ZP_05275621.1\| yeast translation initiation protein [Listeria monocytogenes FSL J2-... gi\|254879133 - gi\|254879133\|ref\|ZP_05251843.1\| yeast translation initiation protein [Listeria monocytogenes FSL J2-... gi\|255519763 - gi\|255519763\|ref\|ZP_05387000.1\| yeast translation initiation protein [Listeria monocytogenes FSL J1-...	374.0	[0..42]	[425..7]
gi\|16415221, gi\|... - pir\|\|AG1767 yeast translation initiation protein homolog lin2685 [imported] - Listeria innocua (stra... gi\|16801746 - gi\|16801746\|ref\|NP_472014.1\| hypothetical protein lin2685 [Listeria innocua Clip11262]	373.0	[0..43]	[424..8]
gi\|49640268, gi\|... - gi\|50302405\|ref\|XP_451137.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640268\|emb\|CAH0272... gi\|49640268 - gi\|49640268\|emb\|CAH02725.1\| KLLA0A03135p [Kluyveromyces lactis]	372.0	[0..18]	[426..10]
gi\|18976678, gi\|... - gi\|18976678\|ref\|NP_578035.1\| sua5 superfamily-related protein [Pyrococcus furiosus DSM 3638], gi\|188...	372.0	[0..45]	[425..8]
gi\|25305355 - pir\|\|C84121 hypothetical protein BH3771 [imported] - Bacillus halodurans (strain C-125) gi\|10176395, gi\|... - gi\|15616333\|ref\|NP_244638.1\| hypothetical protein BH3771 [Bacillus halodurans C-125], gi\|10176395\|db...	371.0	[0..45]	[425..16]

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Predicted Domain #1

Region A:
Residues: [1-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLGRHFLAM TSKALFDTKI LKVNPLSIIF SPDAHIDGSL PTITDPETEA ALVEAARIIR  60
   61 DTDETVAFPT ETVYGLGGSA LNDNSVLSIY RAKNRPSDNP LITHVSSIDQ LNRKVFNQPH 120
  121 LSGTSLFDNI PSIYRPLISS LWPGPLTILL PVPSSEHSAL SKLTTADQPT FAVRIPANPV 180
  181 ARALIALSDT PIAAPSANAS TRPSPTLASH VYHDLKDKIP IILDGGACKV GVESTVVDGL 240
  241 CNPPTLLRP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.69897
Match:	1kk9A
Description:	Hypothetical protein YciO
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [250-285]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGFTYEEIVK LGGEAWSLCK VENKKTVEKG EKVRTP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [286-426]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GMKYRHYSPS AKVVLLVPHC EGDGILKGVD RMERLKRLIE TELKANSNIK KIAILTSLKL  60
   61 RDSDLQSKIF NEPDFSSKTF IIERLGQSGE EIQTNLFAAL RKVDENDKVD LIFVEGINEE 120
  121 GEGLAVMNRL RKAAANNCIQ F

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.0
Match:	2yv4A
Description:	No description for 2yv4A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits