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View Structure Prediction Details

Protein: YRB30
Organism: Saccharomyces cerevisiae
Length: 440 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YRB30.

Description E-value Query
Range
Subject
Range
YRB30 - RanGTP-binding protein, inhibits RanGAP1 (Rna1p)-mediated GTP hydrolysis of RanGTP (Gsp1p); shares s...
YRB30_YEAST - Ran-specific GTPase-activating protein 30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G...
gi|207345465 - gi|207345465|gb|EDZ72282.1| YGL164Cp-like protein [Saccharomyces cerevisiae AWRI1631]
0.0 [1..440] [1..440]
YA4A_SCHPO - Uncharacterized protein C31A2.10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC31A2....
SPAC31A2.10 - RanGTP-binding protein
0.0 [1..412] [1..458]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
0.0 [1..412] [1..469]

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Predicted Domain #1
Region A:
Residues: [1-216]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEILAKAGS QAVTFAIKSG ISIASTYALK TITNFVVQIP KDDARRIDQL KFKLESRMAI  60
   61 VSSAIDLIKL VAARGNTNLQ ITLRLTKDLK EEIDRFDEKI NEMTQKVEGS RSAKTQNEAI 120
  121 KAVENYIKDL LLRIEEITPF INLSLTTSGA NLNSALPYQL SPGLLLKASD FVSENNRKYE 180
  181 KAMKSNEKGT GDKEILKVQV GPTFEVTLFS IFYNLT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [217-440]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SENNGQSGIV WKEDMKRAKA RIYRLNSTGR KYDYFMKIEQ DFNDGRYHED DDKEDTPQEL  60
   61 AIDLNHIKKL FFSVSGKLLR LEEQDSPVLV LKIDRSDDKE NESSEGDKGL LDDITWYAVS 120
  121 GYEAIEEDEE EDEEEDEEEG KDGEERKEEE EEENKLEDKD SSITLLEYII RLTSLQSNDQ 180
  181 KSILEVSDER LSIYLNDENT NSRKDRISNS TIEETEKKLK NLKL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle