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View Structure Prediction Details

Protein: PCL10
Organism: Saccharomyces cerevisiae
Length: 433 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PCL10.

Description E-value Query
Range
Subject
Range
PCL10 - Pho85p cyclin; recruits, activates, and targets Pho85p cyclin-dependent protein kinase to its substr...
PCL10_YEAST - PHO85 cyclin-10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PCL10 PE=1 SV=1
0.0 [1..433] [1..433]
gi|12005319 - gi|12005319|gb|AAG44390.1| cyclin 4 [Trypanosoma cruzi]
1.0E-65 [137..430] [164..445]
CCU43_ARATH - Cyclin-U4-3 OS=Arabidopsis thaliana GN=CYCU4-3 PE=1 SV=1
7.0E-52 [250..430] [2..174]
gi|25493992, gi|... - gi|2982283|gb|AAC32127.1| PREG-like protein [Picea mariana], pir||T52062 PREG-like protein [imported...
6.0E-51 [271..429] [71..221]

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Predicted Domain #1
Region A:
Residues: [1-206]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDMTKNHTTD TEEFDDGDIR PVSLGIVDDY NASFELPLKP KFLQSENFSD LTSEWDQSRS  60
   61 NTPGLAEGKT EKAQPCGTTD SSKNRIHVEQ LLESANEMNN YLAQNIENIN NFQVGLLNGG 120
  121 KGLYSSMGDD SSACINGTNF SSTSNFELSD DELEDTTGCT SSIFDKDLFH QQNGLSIPRR 180
  181 RSPLFKSPTA SFEIGDATDV EEQDID

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [207-433]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSIFSECSSI TSFDMGGLHI SLPHDEEEDQ EKTKSESENP LLHGIPVDVE VPHISVDEAL  60
   61 ANFKETIELL LKLSGNRKCT GFNTRVEKKE YSNFYMKSKP TLSSADFLKR IQDKCEYQPT 120
  121 VYLVATFLID TLFLTRDGNN ILQLKLNLQE KEVHRMIIAA VRLSTKLLED FVHSHEYFSK 180
  181 VCGISKRLLT KLEVSLLICV CNTKLMVSNR KLAASKLLLN ELRSFCV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [303-433]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSKPTLSSAD FLKRIQDKCE YQPTVYLVAT FLIDTLFLTR DGNNILQLKL NLQEKEVHRM  60
   61 IIAAVRLSTK LLEDFVHSHE YFSKVCGISK RLLTKLEVSL LICVCNTKLM VSNRKLAASK 120
  121 LLLNELRSFC V

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.985
Match: 1d3uB
Description: Transcription factor IIB (TFIIB), core domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle