| Protein: | SNT2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1403 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNT2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1388] | [1..1388] |
|
|
3.0E-59 | [766..1205] | [58..459] |
|
|
3.0E-55 | [817..1262] | [33..461] |
|
|
4.0E-55 | [817..1262] | [33..461] |
|
Region A: Residues: [1-102] |
1 11 21 31 41 51
| | | | | |
1 MPKEEDFQLP RRREAAKNVN YNEMEIDTKL VQQIQIAEKS GAKTKGSNSQ TPRNCKRTSN 60
61 PASRNEKFKY QKFLHDKNTC WNFIPTLPPS FRKNSRFSNI LD
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.203 | a.74.1 | Cyclin-like |
| View | Download | 0.202 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.257 | a.55.1 | IHF-like DNA-binding proteins |
| View | Download | 0.260 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.260 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.257 | a.55.1 | IHF-like DNA-binding proteins |
| View | Download | 0.203 | a.74.1 | Cyclin-like |
| View | Download | 0.202 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
|
Region A: Residues: [103-272] |
1 11 21 31 41 51
| | | | | |
1 LDDAMIDLKK MSLFNTESVL LSANDTIYMI SEPAGEPYYV GRVVNFVSKP EFSNTIHEAI 60
61 KTTSVFPAKF FQVRMNWFYR PRDIQEHVNT FNPRLVYASL HQDICPISSY RGKCSIFHKD 120
121 EVFDVLPNEK ECIIRPNIFY FDELFDRYTL KYYKVYSTDK ILNKWNSKSP
|
| Detection Method: | |
| Confidence: | 31.420216 |
| Match: | PF01426 |
| Description: | BAH domain |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [273-412] |
1 11 21 31 41 51
| | | | | |
1 FLYVLNRRFR YIYTEPKYPL ENVLKKYVFH ELEVNELSPA DYQWDKRCQF CKEWCIQKES 60
61 LSCDECGVCA HLYCMDPPLD RKPNKDVVWT CFSCLQKQQG TKDSHVRFLE EQALELDFIR 120
121 SVRQKIEEIS SKAIKENVGY
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| Detection Method: | |
| Confidence: | 7.045757 |
| Match: | 1fp0A_ |
| Description: | Nuclear corepressor KAP-1 (TIF-1beta) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [413-480] |
1 11 21 31 41 51
| | | | | |
1 NTENCWFQYL GIYSISHIGD ALNDSMFFPY PFKPSRVGVK YQWNGCNHNV PWRRNSYISA 60
61 NSEEERGS
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.340 | 0.598 | nucleus | a.21.1 | HMG-box |
| View | Download | 0.435 | 0.077 | cytoplasm | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.335 | 0.059 | cytoplasm | d.58.17 | Metal-binding domain |
| View | Download | 0.280 | 0.000 | nucleus | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.309 | N/A | N/A | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.278 | N/A | N/A | c.15.1 | BRCT domain |
| View | Download | 0.278 | N/A | N/A | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.267 | N/A | N/A | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.261 | N/A | N/A | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.241 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.215 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.204 | N/A | N/A | f.17.1 | F1F0 ATP synthase subunit C |
| View | Download | 0.204 | N/A | N/A | a.7.7 | BAG domain |
|
Region A: Residues: [481-556] |
1 11 21 31 41 51
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1 TKTSELAWVL DASKITTRKL SEYIEQCKSE ICPILNVRGE TCNFIDVVLK NLLFTNYDTA 60
61 EAFKKCKREL SRKFLK
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.632 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.608 | a.64.1 | Saposin |
| View | Download | 0.613 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.615 | d.68.4 | YhbY-like |
| View | Download | 0.575 | a.64.1 | Saposin |
| View | Download | 0.555 | a.1.1 | Globin-like |
| View | Download | 0.548 | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.513 | a.74.1 | Cyclin-like |
| View | Download | 0.507 | a.5.6 | Hypothetical protein MTH1615 |
| View | Download | 0.492 | c.45.1 | (Phosphotyrosine protein) phosphatases II |
| View | Download | 0.476 | b.84.2 | Rudiment single hybrid motif |
| View | Download | 0.476 | a.77.1 | DEATH domain |
| View | Download | 0.468 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.465 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.446 | a.78.1 | Fatty acid responsive transcription factor FadR, C-terminal domain |
| View | Download | 0.444 | a.118.8 | TPR-like |
| View | Download | 0.429 | a.112.1 | Description not found. |
| View | Download | 0.424 | a.74.1 | Cyclin-like |
| View | Download | 0.411 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.404 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.364 | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.363 | d.50.3 | PI-Pfui intein middle domain |
| View | Download | 0.361 | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.344 | a.77.1 | DEATH domain |
| View | Download | 0.335 | a.24.3 | Cytochromes |
| View | Download | 0.335 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.331 | a.1.1 | Globin-like |
| View | Download | 0.328 | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.318 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.317 | a.126.1 | Serum albumin-like |
| View | Download | 0.296 | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.293 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.289 | d.45.1 | ClpS-like |
| View | Download | 0.280 | a.3.1 | Cytochrome c |
| View | Download | 0.276 | a.58.1 | Chemotaxis receptor methyltransferase CheR, N-terminal domain |
| View | Download | 0.271 | a.5.7 | 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain |
| View | Download | 0.269 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.269 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.265 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.264 | a.130.1 | Chorismate mutase II |
| View | Download | 0.261 | a.74.1 | Cyclin-like |
| View | Download | 0.260 | a.4.8 | Ribosomal protein S18 |
| View | Download | 0.256 | a.118.13 | Arp2/3 complex 16 kDa subunit ARPC5 |
| View | Download | 0.251 | d.58.14 | Ribosomal protein S6 |
| View | Download | 0.248 | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.247 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.244 | e.37.1 | Bifunctional dehydrogenase/ferrochelatase Met8p, dimerisation and C-terminal domains |
| View | Download | 0.242 | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.241 | a.64.1 | Saposin |
| View | Download | 0.240 | a.46.1 | Methionine synthase domain |
| View | Download | 0.238 | a.37.1 | A DNA-binding domain in eukaryotic transcription factors |
| View | Download | 0.238 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.238 | a.60.4 | DNA repair protein Rad51, N-terminal domain |
| View | Download | 0.231 | a.39.1 | EF-hand |
| View | Download | 0.226 | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.224 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.223 | d.68.7 | R3H domain |
| View | Download | 0.221 | c.102.1 | Cell-division inhibitor MinC, N-terminal domain |
| View | Download | 0.220 | d.68.3 | SirA-like |
| View | Download | 0.219 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.217 | a.5.2 | UBA-like |
| View | Download | 0.217 | a.179.1 | Replisome organizer (g39p helicase loader/inhibitor protein) |
| View | Download | 0.210 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.210 | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.209 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.207 | a.6.1 | Putative DNA-binding domain |
| View | Download | 0.206 | a.39.4 | Hypothetical protein MTH865 |
| View | Download | 0.203 | a.57.1 | Protein HNS-dependent expression A; HdeA |
| View | Download | 0.202 | a.39.1 | EF-hand |
| View | Download | 0.201 | a.81.1 | N-terminal domain of DnaB helicase |
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Region A: Residues: [557-628] |
1 11 21 31 41 51
| | | | | |
1 EPSFTAVEIR KFEEAVEKFG SELRPVCEYV GTQPMSMIVR FYYNWKKTER GLTVRGKLSK 60
61 LSKNKRKKEI AN
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| Detection Method: | |
| Confidence: | 10.376751 |
| Match: | PF00249 |
| Description: | Myb-like DNA-binding domain |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
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Region A: Residues: [629-756] |
1 11 21 31 41 51
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1 HENDVETKYI DDSSFDTEKL SLAESSFQCM FCKTDYSPMW YRVTGGSDDE KIKIRMQTGV 60
61 NEKTEISEKS PAHSKKNEKL GALCIRCARM WRRYAIKWVP PLETLRKITG TCQNSFYSAI 120
121 EGIIEENN
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.555 | a.1.1 | Globin-like |
| View | Download | 0.513 | a.74.1 | Cyclin-like |
| View | Download | 0.492 | c.45.1 | (Phosphotyrosine protein) phosphatases II |
| View | Download | 0.465 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.446 | a.78.1 | Fatty acid responsive transcription factor FadR, C-terminal domain |
| View | Download | 0.426 | f.32.1 | a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
| View | Download | 0.405 | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
| View | Download | 0.404 | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
| View | Download | 0.392 | f.18.1 | F1F0 ATP synthase subunit A |
| View | Download | 0.367 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.362 | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.333 | a.7.8 | GAT domain |
| View | Download | 0.326 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.321 | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.314 | d.42.1 | POZ domain |
| View | Download | 0.303 | a.25.1 | Ferritin-like |
| View | Download | 0.298 | a.118.1 | ARM repeat |
| View | Download | 0.289 | d.58.20 | NAD-binding domain of HMG-CoA reductase |
| View | Download | 0.286 | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.261 | a.75.1 | Ribosomal protein S7 |
| View | Download | 0.260 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.258 | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.257 | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.232 | d.52.7 | Ribosome-binding factor A, RbfA |
| View | Download | 0.224 | c.50.1 | Macro domain-like |
| View | Download | 0.222 | d.14.1 | Ribosomal protein S5 domain 2-like |
| View | Download | 0.221 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.218 | a.1.1 | Globin-like |
| View | Download | 0.217 | a.1.1 | Globin-like |
| View | Download | 0.205 | d.6.1 | Prion-like |
| View | Download | 0.204 | a.7.1 | Spectrin repeat |
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Region A: Residues: [757-1036] |
1 11 21 31 41 51
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1 TNKFTLSPFQ AHNKLLEWEL VQDSELIIRQ RMKVYKNPNS FVKMKRYSMT FHTQLYKMAV 60
61 RSYRKNEFHP ETMQRDLELF IEDNKEVRKA IPEQKPERAK NTKDEFPVNI IRQSPGTIKT 120
121 SDTSRNRKCN DVFIEKASNN NIPKITNASN DLIEISIKTG GSSSGSVSVD KGFKFVKFDN 180
181 KTFQRLRNSL KLVNNKLPKY NEPSTKKIKM INDIALSNPL NEPNGASYNY TVISHSKETS 240
241 VALEKYHDGN KPSKMLEKDM ILKHTKNKPK NPDTAWANNS
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| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.254 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.219 | N/A | N/A | i.1.1 | Ribosome and ribosomal fragments |
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Region A: Residues: [1037-1119] |
1 11 21 31 41 51
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1 ARTFCSVCKE KFNDNDNYEV VCGNCGLTVH YFCYAIKLPK DMKKNTNLKT FKWLCDPCSN 60
61 DLNPIISTTY QCSMCPTKDY DYD
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| Detection Method: | |
| Confidence: | 11.853872 |
| Match: | PF00628 |
| Description: | PHD-finger |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1120-1309] |
1 11 21 31 41 51
| | | | | |
1 RYRSQSFKIC PDALKCTSLG TWVHLVCSLF NEDIKYGNGQ SMQPALNTTA VLIKHSRFTC 60
61 GVCRINGGGL VKCNKCQYRY HITCAQNSSN FKLMFEKKNM SVDTTLPCIK DVKLNDTYTL 120
121 RPILICDRHD ISLEGNELYP LSYKPQHTLS YIEQYCRYYK CESDHSLVEL RYFEQLRLRH 180
181 GEMPGNSHDS
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [1310-1403] |
1 11 21 31 41 51
| | | | | |
1 AIKPKIYVLP FERTCPHCGT NKSLYWYEDI ICHSCNLRSG AQELDFDSAS ANISNDNGLP 60
61 VEITQQLMEG IEPAMFDIDI SEAGTDKNTH PSSQ
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| Detection Method: | |
| Confidence: | 3.60206 |
| Match: | PF00320 |
| Description: | GATA zinc finger |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
