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View Structure Prediction Details

Protein: SNT2
Organism: Saccharomyces cerevisiae
Length: 1403 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNT2.

Description E-value Query
Range
Subject
Range
gi|1945299 - gi|1945299|emb|CAA96841.1| unnamed protein product [Saccharomyces cerevisiae]
0.0 [1..1388] [1..1388]
AIRE_MOUSE - Autoimmune regulator OS=Mus musculus GN=Aire PE=1 SV=1
3.0E-59 [766..1205] [58..459]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
3.0E-55 [817..1262] [33..461]
gi|119584380, gi... - gi|19584408|emb|CAD28495.1| hypothetical protein [Homo sapiens], gi|119584380|gb|EAW63976.1| bromodo...
4.0E-55 [817..1262] [33..461]

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Predicted Domain #1
Region A:
Residues: [1-102]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKEEDFQLP RRREAAKNVN YNEMEIDTKL VQQIQIAEKS GAKTKGSNSQ TPRNCKRTSN  60
   61 PASRNEKFKY QKFLHDKNTC WNFIPTLPPS FRKNSRFSNI LD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [103-272]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDDAMIDLKK MSLFNTESVL LSANDTIYMI SEPAGEPYYV GRVVNFVSKP EFSNTIHEAI  60
   61 KTTSVFPAKF FQVRMNWFYR PRDIQEHVNT FNPRLVYASL HQDICPISSY RGKCSIFHKD 120
  121 EVFDVLPNEK ECIIRPNIFY FDELFDRYTL KYYKVYSTDK ILNKWNSKSP 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 31.420216
Match: PF01426
Description: BAH domain

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [273-412]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FLYVLNRRFR YIYTEPKYPL ENVLKKYVFH ELEVNELSPA DYQWDKRCQF CKEWCIQKES  60
   61 LSCDECGVCA HLYCMDPPLD RKPNKDVVWT CFSCLQKQQG TKDSHVRFLE EQALELDFIR 120
  121 SVRQKIEEIS SKAIKENVGY 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.045757
Match: 1fp0A_
Description: Nuclear corepressor KAP-1 (TIF-1beta)
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [413-480]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTENCWFQYL GIYSISHIGD ALNDSMFFPY PFKPSRVGVK YQWNGCNHNV PWRRNSYISA  60
   61 NSEEERGS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [481-556]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TKTSELAWVL DASKITTRKL SEYIEQCKSE ICPILNVRGE TCNFIDVVLK NLLFTNYDTA  60
   61 EAFKKCKREL SRKFLK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [557-628]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPSFTAVEIR KFEEAVEKFG SELRPVCEYV GTQPMSMIVR FYYNWKKTER GLTVRGKLSK  60
   61 LSKNKRKKEI AN

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 10.376751
Match: PF00249
Description: Myb-like DNA-binding domain

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [629-756]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HENDVETKYI DDSSFDTEKL SLAESSFQCM FCKTDYSPMW YRVTGGSDDE KIKIRMQTGV  60
   61 NEKTEISEKS PAHSKKNEKL GALCIRCARM WRRYAIKWVP PLETLRKITG TCQNSFYSAI 120
  121 EGIIEENN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #8
Region A:
Residues: [757-1036]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNKFTLSPFQ AHNKLLEWEL VQDSELIIRQ RMKVYKNPNS FVKMKRYSMT FHTQLYKMAV  60
   61 RSYRKNEFHP ETMQRDLELF IEDNKEVRKA IPEQKPERAK NTKDEFPVNI IRQSPGTIKT 120
  121 SDTSRNRKCN DVFIEKASNN NIPKITNASN DLIEISIKTG GSSSGSVSVD KGFKFVKFDN 180
  181 KTFQRLRNSL KLVNNKLPKY NEPSTKKIKM INDIALSNPL NEPNGASYNY TVISHSKETS 240
  241 VALEKYHDGN KPSKMLEKDM ILKHTKNKPK NPDTAWANNS 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #9
Region A:
Residues: [1037-1119]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ARTFCSVCKE KFNDNDNYEV VCGNCGLTVH YFCYAIKLPK DMKKNTNLKT FKWLCDPCSN  60
   61 DLNPIISTTY QCSMCPTKDY DYD

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 11.853872
Match: PF00628
Description: PHD-finger

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #10
Region A:
Residues: [1120-1309]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RYRSQSFKIC PDALKCTSLG TWVHLVCSLF NEDIKYGNGQ SMQPALNTTA VLIKHSRFTC  60
   61 GVCRINGGGL VKCNKCQYRY HITCAQNSSN FKLMFEKKNM SVDTTLPCIK DVKLNDTYTL 120
  121 RPILICDRHD ISLEGNELYP LSYKPQHTLS YIEQYCRYYK CESDHSLVEL RYFEQLRLRH 180
  181 GEMPGNSHDS 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #11
Region A:
Residues: [1310-1403]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AIKPKIYVLP FERTCPHCGT NKSLYWYEDI ICHSCNLRSG AQELDFDSAS ANISNDNGLP  60
   61 VEITQQLMEG IEPAMFDIDI SEAGTDKNTH PSSQ

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 3.60206
Match: PF00320
Description: GATA zinc finger

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle