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View Structure Prediction Details

Protein: RPS2
Organism: Saccharomyces cerevisiae
Length: 254 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS2.

Description E-value Query
Range		 Subject
Range
RS2_ICTPU - 40S ribosomal protein S2 OS=Ictalurus punctatus GN=rps2 PE=2 SV=1
 0.0 [10..253] [20..264]
gi|2920833 - gi|2920833|gb|AAC04625.1| ribosomal protein S2 [Rattus norvegicus]
 0.0 [24..253] [6..236]
RS2_MOUSE - 40S ribosomal protein S2 OS=Mus musculus GN=Rps2 PE=1 SV=3
gi|57718 - gi|57718|emb|CAA40679.1| ribosomal protein S2 [Rattus rattus]
gi|55249864 - gb|AAH86024.1| Unknown (protein for MGC:98099) [Xenopus laevis]
gi|223975107 - gi|223975107|gb|ACN31741.1| unknown [Zea mays]
RS2_RAT - 40S ribosomal protein S2 OS=Rattus norvegicus GN=Rps2 PE=1 SV=1
 0.0 [3..253] [28..279]
RS2_BOVIN - (O18789) 40S ribosomal protein S2 (Fragment)
 0.0 [3..253] [21..272]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
 5.0E-95 [48..253] [1..207]

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Predicted Domain #1
Region A:
Residues: [1-61] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAPEAQQQK RGGFGGRNRG RPNRRGPRNT EEKGWVPVTK LGRLVKAGKI TTIEEIFLHS  60
   61 L

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [62-254] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVKEFQIIDT LLPGLQDEVM NIKPVQKQTR AGQRTRFKAV VVVGDSNGHV GLGIKTAKEV  60
   61 AGAIRAGIII AKLSVIPIRR GYWGTNLGQP HSLATKTTGK CGSVTVRLIP APRGSGIVAS 120
  121 PAVKKLLQLA GVEDVYTQSN GKTRTLENTL KAAFVAIGNT YGFLTPNLWA EQPLPVSPLD 180
  181 IYSDEASAQK KRF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 783.68867
Match: 1k5xE_
Description: No description for 1k5xE_ was found.
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle