YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: MLC1
Organism: Saccharomyces cerevisiae
Length: 149 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MLC1.

Description E-value Query
Range
Subject
Range
CALM3_PETHY - Calmodulin-related protein OS=Petunia hybrida GN=CAM53 PE=2 SV=2
2.0E-60 [2..148] [8..148]
CALM_SPIOL - (P04353) Calmodulin (CaM)
7.0E-60 [2..149] [7..148]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
6.0E-59 [2..146] [9..147]
CALM_STIJA - (P21251) Calmodulin (CaM)
2.0E-58 [2..149] [7..148]
gi|18655709, gi|... - gi|18655710|pdb|1K93|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of Anthrax Edema Fa...
3.0E-58 [2..149] [3..144]
CALM_HALOK - Calmodulin OS=Halichondria okadai PE=2 SV=3
5.0E-58 [2..149] [8..149]

Back

Predicted Domain #1
Region A:
Residues: [1-85]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSATRANKDI FTLFDKKGQG AIAKDSLGDY LRAIGYNPTN QLVQDIINAD SSLRDASSLT  60
   61 LDQITGLIEV NEKELDATTK AKTED

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 256.68867
Match: 1ggwA_
Description: Cdc4p
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
troponin T binding 7.68526659589559 bayes_pls_golite062009
structural constituent of muscle 6.34041234021534 bayes_pls_golite062009
actin-dependent ATPase activity 6.31366142616096 bayes_pls_golite062009
N-terminal myristoylation domain binding 5.746886320739 bayes_pls_golite062009
microfilament motor activity 5.62061944255026 bayes_pls_golite062009
myosin II heavy chain binding 5.49688740358168 bayes_pls_golite062009
G-protein beta/gamma-subunit binding 4.55143407827976 bayes_pls_golite062009
actin binding 3.96919556235483 bayes_pls_golite062009
calcium ion binding 3.79609619542776 bayes_pls_golite062009
myosin heavy chain binding 3.63014173976595 bayes_pls_golite062009
cytoskeletal protein binding 3.49668552859347 bayes_pls_golite062009
motor activity 3.25814691068414 bayes_pls_golite062009
binding 3.17556402087346 bayes_pls_golite062009
metal ion binding 2.62077305565026 bayes_pls_golite062009
cation binding 2.62077305565026 bayes_pls_golite062009
ion binding 2.61312132078717 bayes_pls_golite062009
tubulin binding 2.51210014078446 bayes_pls_golite062009
actin filament binding 2.35534489389161 bayes_pls_golite062009
myosin binding 2.34125070430971 bayes_pls_golite062009
ion transmembrane transporter activity 2.29802198409541 bayes_pls_golite062009
cation transmembrane transporter activity 2.28098452079347 bayes_pls_golite062009
microtubule binding 2.17136406283012 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 2.12961051741613 bayes_pls_golite062009
structural molecule activity 2.02132683356917 bayes_pls_golite062009
transcription regulator activity 1.82714164083189 bayes_pls_golite062009
metal ion transmembrane transporter activity 1.74951443813569 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 1.51057181410195 bayes_pls_golite062009
kinase activity 1.48008348280256 bayes_pls_golite062009
nucleic acid binding 1.43263098461462 bayes_pls_golite062009
DNA binding 1.40714762620388 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 1.34982153616582 bayes_pls_golite062009
protein binding 1.16246005294206 bayes_pls_golite062009
transporter activity 1.15928534291452 bayes_pls_golite062009
molecular transducer activity 1.11607939838219 bayes_pls_golite062009
signal transducer activity 1.11607939838219 bayes_pls_golite062009
transferase activity 1.00143834284844 bayes_pls_golite062009
actin monomer binding 0.9954841049256 bayes_pls_golite062009
nitric-oxide synthase binding 0.965098383344279 bayes_pls_golite062009
transmembrane transporter activity 0.945691505472547 bayes_pls_golite062009
cation channel activity 0.856991182112951 bayes_pls_golite062009
cyclase regulator activity 0.84389905735679 bayes_pls_golite062009
guanylate cyclase regulator activity 0.84389905735679 bayes_pls_golite062009
hydrolase activity 0.460408471514041 bayes_pls_golite062009
substrate-specific transporter activity 0.438908712437433 bayes_pls_golite062009
substrate-specific channel activity 0.366129174039334 bayes_pls_golite062009
0.34446792626966 bayes_pls_golite062009
voltage-gated cation channel activity 0.341357838238159 bayes_pls_golite062009
channel regulator activity 0.32809521759917 bayes_pls_golite062009
myosin II binding 0.311147527050891 bayes_pls_golite062009
voltage-gated channel activity 0.308919475701377 bayes_pls_golite062009
voltage-gated ion channel activity 0.304496519713588 bayes_pls_golite062009
potassium channel activity 0.260530997378698 bayes_pls_golite062009
active transmembrane transporter activity 0.246383459363256 bayes_pls_golite062009
ER retention sequence binding 0.234166588492671 bayes_pls_golite062009
gated channel activity 0.175191914660841 bayes_pls_golite062009
voltage-gated potassium channel activity 0.157059988605635 bayes_pls_golite062009
structural constituent of cytoskeleton 0.116648335890738 bayes_pls_golite062009
channel activity 0.0711800677928949 bayes_pls_golite062009
passive transmembrane transporter activity 0.0711800677928949 bayes_pls_golite062009
receptor binding 0.0645779132227158 bayes_pls_golite062009
ion channel activity 0.0166394982861724 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [86-149]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FVKAFQVFDK ESTGKVSVGD LRYMLTGLGE KLTDAEVDEL LKGVEVDSNG EIDYKKFIED  60
   61 VLRQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 256.68867
Match: 1ggwA_
Description: Cdc4p
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle