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View Structure Prediction Details

Protein: RPL28
Organism: Saccharomyces cerevisiae
Length: 149 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL28.

Description E-value Query
Range
Subject
Range
RL27A_MOUSE - 60S ribosomal protein L27a OS=Mus musculus GN=Rpl27a PE=1 SV=5
5.0E-45 [1..149] [1..148]
gi|57696 - gi|57696|emb|CAA36947.1| unnamed protein product [Rattus rattus]
RL27A_RAT - 60S ribosomal protein L27a OS=Rattus norvegicus GN=Rpl27a PE=1 SV=3
5.0E-45 [1..149] [1..148]
ENSPTRT00000006317 - null
RL27A_PONAB - 60S ribosomal protein L27a OS=Pongo abelii GN=RPL27A PE=2 SV=3
RL27A_PONPY - 60S ribosomal protein L27a - Pongo pygmaeus (Orangutan)
RPL27A - ribosomal protein L27a
1.0E-44 [1..149] [1..148]
gi|1263104 - gi|1263104|emb|CAA65760.1| ORF [Bos taurus]
1.0E-43 [1..147] [3..153]
RL27A_XENLA - 60S ribosomal protein L27a OS=Xenopus laevis GN=rpl27a PE=2 SV=2
2.0E-43 [1..149] [1..148]
gi|15293923 - gi|15293923|gb|AAK95154.1|AF401582_1 ribosomal protein L27a [Ictalurus punctatus]
2.0E-42 [1..149] [1..148]
gi|14716988 - gi|14716988|emb|CAC44159.1| putative ribosomal protein L27A protein [Oncorhynchus mykiss]
3.0E-42 [5..149] [1..144]

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Predicted Domain #1
Region A:
Residues: [1-57]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSRFTKTRK HRGHVSAGKG RIGKHRKHPG GRGMAGGQHH HRINMDKYHP GYFGKVG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 738.69897
Match: 1k5yV_
Description: No description for 1k5yV_ was found.

Predicted Domain #2
Region A:
Residues: [58-149]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRYFHKQQAH FWKPVLNLDK LWTLIPEDKR DQYLKSASKE TAPVIDTLAA GYGKILGKGR  60
   61 IPNVPVIVKA RFVSKLAEEK IRAAGGVVEL IA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 738.69897
Match: 1k5yV_
Description: No description for 1k5yV_ was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle