YRC Public Data Repository - Protein Structure Prediction

Protein:	NBP35
Organism:	Saccharomyces cerevisiae
Length:	328 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NBP35.

Description	E-value	Query Range	Subject Range
gi\|190407047 - gi\|190407047\|gb\|EDV10314.1\| 35 kDa nucleotide binding protein [Saccharomyces cerevisiae RM11-1a] NBP35 - Essential iron-sulfur cluster binding protein localized in the cytoplasm; forms a complex with Cfd1p... NBP35_YEAST - Cytosolic Fe-S cluster assembly factor NBP35 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c... gi\|151943717 - gi\|151943717\|gb\|EDN62027.1\| nucleotide binding protein [Saccharomyces cerevisiae YJM789]	5.0E-96	[1..328]	[1..328]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	1.0E-95	[1..328]	[1..328]
NUBP1_MOUSE - Cytosolic Fe-S cluster assembly factor NUBP1 OS=Mus musculus GN=Nubp1 PE=1 SV=1	2.0E-87	[23..321]	[4..303]
SPAC637.08 - iron-sulfur cluster assembly ATPase Nbp35 NBP35_SCHPO - Cytosolic Fe-S cluster assembly factor nbp35 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) ...	2.0E-85	[10..312]	[4..300]
NUBP1_DICDI - Cytosolic Fe-S cluster assembly factor NUBP1 homolog OS=Dictyostelium discoideum GN=nubp1 PE=3 SV=1 gi\|66817548, gi\|... - gi\|66817548\|ref\|XP_642627.1\| nucleotide binding protein 1 [Dictyostelium discoideum AX4], gi\|6047070...	2.0E-85	[18..327]	[4..313]
NUBP1 - nucleotide binding protein 1 (MinD homolog, E. coli)	8.0E-85	[24..321]	[5..303]
gi\|9758243 - gi\|9758243\|dbj\|BAB08742.1\| nucleotide-binding protein [Arabidopsis thaliana]	2.0E-79	[13..322]	[6..310]
APBC_METJA - Iron-sulfur cluster carrier protein OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 /... Y283_METJA - Uncharacterized ATP-binding protein MJ0283 OS=Methanocaldococcus jannaschii GN=MJ0283 PE=3 SV=1	9.0E-74	[34..325]	[1..285]

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Predicted Domain #1

Region A:
Residues: [1-328]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEILPHVND EVLPAEYELN QPEPEHCPGP ESDMAGKSDA CGGCANKEIC ESLPKGPDPD  60
   61 IPLITDNLSG IEHKILVLSG KGGVGKSTFA AMLSWALSAD EDLQVGAMDL DICGPSLPHM 120
  121 LGCIKETVHE SNSGWTPVYV TDNLATMSIQ YMLPEDDSAI IWRGSKKNLL IKKFLKDVDW 180
  181 DKLDYLVIDT PPGTSDEHIS INKYMRESGI DGALVVTTPQ EVALLDVRKE IDFCKKAGIN 240
  241 ILGLVENMSG FVCPNCKGES QIFKATTGGG EALCKELGIK FLGSVPLDPR IGKSCDMGES 300
  301 FLDNYPDSPA SSAVLNVVEA LRDAVGDV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	135.045757
Match:	1g3qA_
Description:	Cell division regulator MinD
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits